Job Description P02924 Confidence 96.77% Date Thu Jan 5 10:57:38 GMT 2012 Rank 99 Aligned Residues 213 % Identity 11% Template c3om1A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution Resolution 1.68 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.		.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																.	.	.	.	.	.	.		.					.	.	.														.
Query SS confidence																																.	.	.	.	.	.	.		.					.	.	.														.
Query Sequence		E	N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	.	.	.	.	.	.	.	L	.	G	F	E	V	.	.	.	I	K	I	A	V	P	D	G	E	K	T	L	N	.	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P
Query Conservation																																.	.	.	.	.	.	.		.					.	.	.														.
Alig confidence											.																					.	.	.	.	.	.	.		.					.	.	.														.
Template Conservation											.
Template Sequence		S	S	L	R	M	A	A	I	L	.	D	D	Q	T	V	C	G	R	G	E	R	L	A	L	A	L	A	R	E	Q	I	N	G	I	I	E	V	P	A	K	A	R	V	E	V	D	I	F	E	L	Q	R	D	S	Q	Y	E	T	T	D	T	M	C	Q	I	L	P	K	G	V	V	S	V	L	G	P	S	S	S	P
Template Known Secondary structure											.		S		S	S	S	S																	S			S	S													S	S														G	G	G			S						S	S
Template Predicted Secondary structure											.
Template SS confidence
		3	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	G	S	A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.												.	.
Template Conservation																																																														.	.	.	.	.	.	.												.	.
Template Sequence		A	S	A	S	T	V	S	H	I	C	G	E	K	E	I	P	H	I	K	V	G	P	E	E	T	P	R	L	Q	Y	L	R	F	A	S	V	S	L	Y	P	S	N	E	D	V	S	L	A	V	S	R	I	L	K	S	F	N	Y	P	S	.	.	.	.	.	.	.	A	S	L	I	C	A	K	A	E	C	L	.	.
Template Known Secondary structure															T							S				S	S			G	G	G	G	G	G					S																	T	T	S			.	.	.	.	.	.	.						S	S	T	T			.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.												.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.	150	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	R	T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	G
Query Conservation
Alig confidence		.	.	.	.																																					.	.	.	.	.	.
Template Conservation		.	.	.	.																																					.	.	.	.	.	.
Template Sequence		.	.	.	.	L	R	L	E	E	L	V	R	G	F	L	I	S	K	E	T	L	S	V	R	M	L	D	D	R	D	P	T	P	L	L	K	E	I	R	D	.	.	.	.	.	.	D	K	V	S	T	I	I	I	D	A	N	A	S	I	S	H	L	V	L	R	K	A	S	E	L	G	M	T	S	A	F	Y	K	Y
Template Known Secondary structure		.	.	.	.			T										S	S	S																						.	.	.	.	.	.		T								S															T	T	T	T	S	T	T
Template Predicted Secondary structure		.	.	.	.																																					.	.	.	.	.	.
Template SS confidence
						153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.							.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		252	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	I	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	T	T	M
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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