Job Description P02924 Confidence 98.55% Date Thu Jan 5 10:57:38 GMT 2012 Rank 81 Aligned Residues 243 % Identity 13% Template c3n0xA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution Resolution 1.50 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.									.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure															.	.																		.	.	.	.	.	.	.	.					.	.	.
Query SS confidence															.	.																		.	.	.	.	.	.	.	.					.	.	.
Query Sequence		N	L	K	L	G	F	L	V	K	Q	P	E	E	.	.	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	.	.	.	.	.	.	.	.	G	F	E	V	.	.	.	I	K	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P
Query Conservation															.	.																		.	.	.	.	.	.	.	.					.	.	.
Alig confidence															.	.																		.	.	.	.	.	.	.	.					.	.	.
Template Conservation
Template Sequence		D	L	K	I	A	L	I	Y	G	K	T	G	P	L	E	A	Y	A	K	Q	T	E	T	G	L	X	X	G	L	E	Y	A	T	K	G	T	X	T	L	D	G	R	K	I	V	V	I	T	K	D	D	Q	S	K	P	D	L	S	K	A	A	L	A	E	A	Y	Q	D	D	G	A	D	I	A	I	G	T	S	S	S
Template Known Secondary structure												S	S	T	T																			T	T	T					T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	G	S	A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.						.	.
Template Conservation																																																														.	.	.	.	.	.	.						.	.
Template Sequence		A	A	A	L	A	D	L	P	V	A	E	E	N	K	K	I	L	I	V	E	P	A	V	A	D	Q	I	T	G	E	K	W	N	R	Y	I	F	R	T	G	R	N	S	S	Q	D	A	I	S	N	A	V	A	I	G	K	Q	G	V	T	.	.	.	.	.	.	.	I	A	T	L	A	.	.	Q	D	Y	A	F	G
Template Known Secondary structure															T							S				G	G	G	G	T	T	T			T	T					S																	T	T			.	.	.	.	.	.	.						.	.		S	S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.						.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.								.	.	160	.	.			.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	R	T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	G
Query Conservation
Alig confidence																																																		.	.	.
Template Conservation																																																		.	.	.
Template Sequence		R	D	G	V	A	A	F	K	E	A	L	A	K	T	G	A	T	L	A	T	E	E	Y	V	P	T	T	T	T	D	F	T	A	V	G	Q	R	L	F	D	A	L	K	D	K	P	G	K	.	.	.	K	I	I	W	V	I	W	A	G	G	G	D	P	L	T	K	L	Q	D	X	D	P	K	R	Y	G	I	E	L
Template Known Secondary structure													T	T	T	T											T	T																T	T		S	S		.	.	.									S	S	S									T		G	G	G	G	T
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	I	N	G	V	D	A	V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	G	G	N	I	L	P	A	L	A	A	Y	K	R	L	P	G	X	E	G	A	T	Y	Y	Y	Y	D
Template Known Secondary structure								T	T	G	G	G	G	G	G	G	S	T	T						S			T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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