Job Description P02924 Confidence 100.00% Date Thu Jan 5 10:57:38 GMT 2012 Rank 15 Aligned Residues 279 % Identity 16% Template c3l49D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 Resolution 2.30 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		M	A	E	N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	E	V	I	K	I	A	V	P	.	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A	I	V	A	K
Query Conservation																																													.
Alig confidence																																													.
Template Conservation
Template Sequence		S	L	E	G	K	T	I	G	I	T	A	I	G	T	D	H	D	W	D	L	K	A	Y	Q	A	Q	I	A	E	I	E	R	L	G	G	T	A	I	A	L	D	A	G	R	N	D	Q	T	Q	V	S	Q	I	Q	T	L	I	A	Q	K	P	D	A	I	I	E	Q	L	G	N	L	D	V	L	N	P	W	L	Q	K
Template Known Secondary structure				T	T								S				S																	T	T									T	T																		S						S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T	G	S	M	D
Query Conservation
Alig confidence																					.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.																											.	.	.	.	.
Template Sequence		I	N	D	A	G	I	P	L	F	T	V	D	T	A	T	P	H	A	I	.	.	.	.	.	.	.	N	N	T	T	S	N	N	Y	S	I	G	A	E	L	A	L	Q	M	V	A	D	L	G	G	K	G	.	.	.	.	.	N	V	L	V	F	N	G	F	Y	S	V	P	V	C	K	I	R	Y	D	Q	M	K	Y
Template Known Secondary structure					T	T							S				T	T		S	.	.	.	.	.	.	.																							T	T			.	.	.	.	.					B		S		T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.																											.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		181	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																			.
Query SS confidence								.																																			.
Query Sequence		A	L	K	A	A	G	.	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	.	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	G	I	G	I	N	G	V	D
Query Conservation								.																																			.
Alig confidence								.																																			.																										.	.
Template Conservation																																																																					.	.
Template Sequence		V	L	E	A	F	P	D	V	K	I	I	E	P	E	L	R	D	V	I	P	N	T	I	Q	S	A	Y	S	N	V	T	D	M	L	T	K	Y	P	N	E	G	D	V	G	A	I	W	A	C	W	D	V	P	M	I	G	A	T	Q	A	L	Q	A	A	G	R	T	.	.	D	I	R	T	Y	G	V	D	G	S	P
Template Known Secondary structure					T		T	T					S	S		B				S	S	S																S		S	T	T	S							S	S	S													T	T			.	.	S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A	K	D	V	E	P	P	K	F	T	E	V	T	D	V	V	L	I	T	R	D	N
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		E	F	V	E	M	V	A	D	P	E	S	P	A	G	A	V	A	A	Q	Q	P	S	E	I	G	K	L	A	V	Q	N	V	A	R	H	L	A	G	Q	E	V	K	P	F	.	.	T	F	A	P	A	V	L	I	T	K	E	N
Template Known Secondary structure										T	T	S																										T	T					S		.	.										S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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