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Job DescriptionP02924
Confidence100.00%DateThu Jan 5 10:57:38 GMT 2012
Rank28Aligned Residues270
% Identity13%Templatec3kkeA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.... .....70.........80.........90.........100.....
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Query Sequence  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP. DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD
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Template Sequence  TIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD. . DMLAAVLEG
Template Known Secondary structure 
S
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   63......70.........80.........90.........100.........110.........120.........130. ........140
 
   106...110.........120.........130.........140.........150.........160.........170.........180.....
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Query Sequence  MKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA
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Template Sequence  VPAVTINS. . . . . . . RVPGRVGSVILDDQKGGGIATEHLITLGHSRI. . . . . . . AFISGTAIHDTAQRRKEGYLETLASA
Template Known Secondary structure  S
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   141....... .150.........160.........170.........180 .........190.........200......
 
   186...190.........200.........210..... ....220.........230.........240....... ..250.........260..
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Query Sequence  GFPEKQIYQVPTKSNDIPGAFDAANSMLVQ. . HPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA. DIIGIGINGVDAVSE
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Template Sequence  GLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGINTTWVSDT
Template Known Secondary structure  T



GGG

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   207..210.........220.........230.........240.........250.........260.........270.........280......
 
   263......270.........280.........290.........300.........310.......
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Query Sequence  LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF
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Template Sequence  V. . . . . YPALTTVRLPLQRLGEVAADVLMEHLGGRALTDTVVTQPTPELLVRETT
Template Known Secondary structure  S.....SS



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   287 ..290.........300.........310.........320.........330......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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