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Job DescriptionP02924
Confidence98.89%DateThu Jan 5 10:57:38 GMT 2012
Rank73Aligned Residues256
% Identity17%Templatec3ip5A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine
Resolution1.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.... .....40.........50... ..... .60.........70.........80.........90..
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Query Sequence  NLKLGFLVKQ. . PEEPWFQTEWKFADKAGKD. . . . . . . LGFEV. . . IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPK
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Template Sequence  DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVADGVKF. VVGHFNSG
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SSTTTT
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   2.......10.........20.........30.........40.........50.........60.........70.. .......80
 
   93......100.........110.........120.........130.........140.........150.........160.........170..
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Query Sequence  LGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR
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Template Sequence  VSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAK. . . . . . . VAIIHD. KTPYGQ
Template Known Secondary structure  TT
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   81........90.........100.........110.........120.........130.........140 ...... ...150..
 
   173......180.........190.........200.........210.........220.........230.........240.........250..
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Query Sequence  RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI
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Template Sequence  GLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKE. . . . . . AGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSGD
Template Known Secondary structure  TT


S

TT



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   153......160.........170.........180.........190. ........200.........210.........220......
 
   253......260.........270....... ..280.........290.....
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Query Sequence  GINGVDAVSELSKAQATGFYGSLLP. . . . . . . . . . . . . . . . . . . . . . SPDVHGYKSSEMLYNWVA
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Template Sequence  GIVSNELASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAAGFNPEAYTLYSYAAMQAIAGAAK
Template Known Secondary structure  GG
STGGGGTT
S

GGG
GGGTT



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   227..230.........240.........250.........260.........270.........280.........290.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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