Job Description P02924 Confidence 100.00% Date Thu Jan 5 10:57:38 GMT 2012 Rank 38 Aligned Residues 273 % Identity 11% Template c3hcwB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus Resolution 2.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																															.
Query SS confidence															.	.	.	.	.																															.
Query Sequence		M	A	E	N	L	K	L	G	F	L	V	K	Q	.	.	.	.	.	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	E	V	I	K	I	A	V	P	.	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S
Query Conservation															.	.	.	.	.																															.
Alig confidence															.	.	.	.	.																															.																													.	.
Template Conservation																																																																															.	.
Template Sequence		T	N	Q	T	Y	K	I	G	L	V	L	K	G	S	E	E	P	I	R	L	N	P	F	Y	I	N	V	L	L	G	I	S	E	T	C	N	Q	H	G	Y	G	T	Q	T	T	V	S	N	N	M	N	D	L	M	D	E	V	Y	K	M	I	K	Q	R	M	V	D	A	F	I	L	L	Y	S	K	E	N	.	.	D
Template Known Secondary structure													S			S					T																		T	T										S														T	T			S					S				T	T	.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T
Query Conservation
Alig confidence																												.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.																												.	.	.	.	.	.	.
Template Sequence		P	I	K	Q	M	L	I	D	E	S	M	P	F	I	V	I	G	K	P	T	S	D	I	D	H	Q	.	.	.	.	F	T	H	I	D	N	D	N	I	L	A	S	E	N	L	T	R	H	V	I	E	Q	G	V	D	E	L	.	.	.	.	.	.	.	I	F	I	T	E	K	G	N	F	E	V	S	K	D	R	I
Template Known Secondary structure										T	T							S				S	S	G	G	G	S	.	.	.	.	S																					T			S			.	.	.	.	.	.	.						S	S
Template Predicted Secondary structure																												.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	.	D	I	I	G	I	G	I
Query Conservation																																																																										.
Alig confidence															.																																.	.																										.
Template Conservation															.																																.	.
Template Sequence		Q	G	F	E	T	V	A	S	Q	F	N	L	D	.	Y	Q	I	I	E	T	S	N	E	R	E	V	I	L	N	Y	M	Q	N	L	H	T	R	L	K	D	P	N	I	K	Q	.	.	A	I	I	S	L	D	A	M	L	H	L	A	I	L	S	V	L	Y	E	L	N	I	E	I	P	K	D	V	M	T	A	T	F
Template Known Secondary structure											T	T			.								S																			S	S	S			.	.					S	S														T	T			T	T	T	T
Template Predicted Secondary structure															.																																.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	V	D	A	V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A	K	D	V	E	P	P	K	F	T	E	V	T	D	V	V	L	I	T	R	D	N	F	K
Query Conservation
Alig confidence											.	.	.	.	.																																		.	.	.
Template Conservation											.	.	.	.	.																																		.	.	.
Template Sequence		N	D	S	Y	L	T	E	I	A	.	.	.	.	.	S	P	P	Q	T	C	I	D	I	K	P	R	M	L	G	Q	Q	A	G	S	A	I	L	N	I	L	K	N	D	V	I	E	L	.	.	.	V	I	I	D	T	E	L	K	I	R	K	S	T	Q
Template Known Secondary structure		S		S					T	S	.	.	.	.	.	S	S																																.	.	.											G	G	G
Template Predicted Secondary structure											.	.	.	.	.																																		.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions