Job Description P02924 Confidence 100.00% Date Thu Jan 5 10:57:38 GMT 2012 Rank 62 Aligned Residues 242 % Identity 17% Template c3gybB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum Resolution 1.60 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	E	V	I	K	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A	I	V	A	K	A	R	G	Y
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	L	I	A	V	L	I	D	D	Y	S	N	P	W	F	I	D	L	I	Q	S	L	S	D	V	L	T	P	K	G	Y	R	L	S	V	I	D	S	L	T	S	Q	A	G	T	D	P	I	T	S	A	L	S	X	R	P	D	G	I	I	I	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S		T	T	S	G	G	G												G	G	G	T								S	S	S	S		S	S	S								T	T			S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T	G	S	M	D	A	L	K	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.								.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.								.	.
Template Sequence		D	I	P	D	F	T	V	P	D	S	L	.	.	.	.	.	.	.	.	.	.	P	D	S	V	A	N	D	D	F	R	G	A	E	I	A	T	K	H	L	I	D	L	G	H	T	H	I	.	.	.	.	.	.	.	A	H	L	R	V	G	S	.	.	G	A	G	L	R	R	F	E	S	F	E	A	T	X	R	A
Template Known Secondary structure		S	S	S	S	S				B			.	.	.	.	.	.	.	.	.	.																						T	T			S		.	.	.	.	.	.	.						S	S	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.								.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.											.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.								.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	.	D	I	I	G	I	G	I	N	G	V	D	A	V	S	E	L
Query Conservation																																																																	.
Alig confidence						.	.																															.	.																										.
Template Conservation						.	.																															.	.
Template Sequence		H	G	L	E	.	.	P	L	S	N	D	Y	L	G	P	A	V	E	H	A	G	Y	T	E	T	L	A	L	L	K	E	H	P	E	V	T	.	.	A	I	F	S	S	N	D	I	T	A	I	G	A	L	G	A	A	R	E	L	G	L	R	V	P	E	D	L	S	I	I	G	Y	D	N	T	P	L	A	Q	T	R
Template Known Secondary structure		T	T			.	.								S																			T	T			.	.					S	S															T			T	T	T	T							S							S	T
Template Predicted Secondary structure						.	.																															.	.
Template SS confidence
		203	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A	K	D	V	E	P	P	K	F	T	E	V	T	D	V	V	L	I	T	R	D	N	F
Query Conservation
Alig confidence		.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																															.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	L	I	N	L	T	T	I	D	D	N	S	I	G	V	G	Y	N	A	A	L	L	L	L	S	X	L	E	I	X	H	.	.	.	.	.	.	.	T	L	Q	P	S	L	I	E	R	G	T	C
Template Known Secondary structure		.	.	.	.	.	T	T																												S	.	.	.	.	.	.	.										S	S
Template Predicted Secondary structure		.	.	.	.	.																															.	.	.	.	.	.	.
Template SS confidence
							279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.								.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions