Job Description P02924 Confidence 100.00% Date Thu Jan 5 10:57:38 GMT 2012 Rank 50 Aligned Residues 264 % Identity 9% Template c3gv0A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens Resolution 2.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																.	.																												.
Query SS confidence																.	.																												.
Query Sequence		E	N	L	K	L	G	F	L	V	K	Q	P	E	E	.	.	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	E	V	I	K	I	A	V	P	.	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A	I	V	A	K
Query Conservation																.	.																												.
Alig confidence																.	.																												.																													.	.
Template Conservation																																																																										.	.
Template Sequence		K	T	N	V	I	A	L	V	L	S	V	D	E	E	L	X	G	F	T	S	Q	X	V	F	G	I	T	E	V	L	S	T	T	Q	Y	H	L	V	V	T	P	H	I	H	A	K	D	S	X	V	P	I	R	Y	I	L	E	T	G	S	A	D	G	V	I	I	S	K	I	E	P	N	.	.	D	P	R	V	R	F
Template Known Secondary structure											B					S	S															T	T	S	S								B	S	S	G	G	G	T	T										T			S						S			T	T	.	.
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T	G	S	M	D
Query Conservation
Alig confidence																					.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Sequence		X	T	E	R	N	X	P	F	V	T	H	G	R	S	D	X	G	I	E	.	.	.	.	.	.	H	A	F	H	D	F	D	N	E	A	Y	A	Y	E	A	V	E	R	L	A	Q	C	G	R	K	R	I	.	.	.	.	.	.	.	A	V	I	V	P	P	S	R	F	S	F	H	D	H	A	R	K	G	F	N	R
Template Known Secondary structure					T	T							S				S	S			.	.	.	.	.	.																						T	T					.	.	.	.	.	.	.							T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	.	D	I	I	G	I	G	I	N	G	V	D	A
Query Conservation																																																																					.
Alig confidence							.																																			.	.																										.
Template Conservation							.																																			.	.
Template Sequence		G	I	R	D	F	.	G	L	T	E	F	P	I	D	A	V	T	I	E	T	P	L	E	K	I	R	D	F	G	Q	R	L	X	Q	S	S	D	R	P	D	.	.	G	I	V	S	I	S	G	S	S	T	I	A	L	V	A	G	F	E	A	A	G	V	K	I	G	E	D	V	D	I	V	S	K	Q	S	A	E	F
Template Known Secondary structure						T	.	T								S			T	T	S													T	T	S	S	S			S	.	.					S														T	T	T			T	T	T	S								S	S	T	T
Template Predicted Secondary structure							.																																			.	.
Template SS confidence
		210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A	K	D	V	E	P	P	K	F	T	E	V	T	D	V	V
Query Conservation
Alig confidence						.	.	.	.	.
Template Conservation						.	.	.	.	.
Template Sequence		L	N	W	I	.	.	.	.	.	K	P	Q	I	H	T	V	N	E	D	I	K	L	A	G	R	E	L	A	K	A	L	L	A	R	I	N	G	E	A	A	E	T	L	Q	S	I	S	G	P	V	W
Template Known Secondary structure						.	.	.	.	.		T	T	S																							T	T			G	G	G	S
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		287	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions