Return to main results Retrieve Phyre Job Id

Job DescriptionP02924
Confidence100.00%DateThu Jan 5 10:57:38 GMT 2012
Rank47Aligned Residues262
% Identity15%Templatec3ctpB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose
Resolution1.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.... .....70.........80.........90.........100...
Predicted Secondary structure 











.












Query SS confidence 







































.






































Query Sequence  NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP. DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG
Query Conservation     

 
       
      
    
   
         .
   
   
  

   





                 
Alig confidence 







































.



























......




Template Conservation 
 




           
  

       
                          
   
       ......     
Template Sequence  SKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGIIASRSQCE. . . . . . DEYAN
Template Known Secondary structure 

S
TTSTT

TT
TT
SS


S......GGGTT
Template Predicted Secondary structure 






















......
Template SS confidence 















































































   60.........70.........80.........90.........100.........110.........120........ .130...
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  YDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK
Query Conservation    
 

  
                
  
    
      
                             
  
      
Alig confidence 















.......

























.......























Template Conservation    

 
          .......  
  
           
       
.......              
  
      
Template Sequence  IDIPVVAFENHILDNI. . . . . . . ITISSDNYNGGRMAFDHLYEKGCRKI. . . . . . . LHIKGPEVFEATELRYKGFLDGAR
Template Known Secondary structure 

S
SS


TTS.......

TT

S.......

TT
Template Predicted Secondary structure 










.......





.......






Template SS confidence 















































































   134.....140......... 150.........160.........170..... ....180.........190.........
 
   184.....190.........200.........210.........220.........230.........240....... ..250.........260..
Predicted Secondary structure 


























.


Query SS confidence 































































.














Query Sequence  AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA. DIIGIGINGVDAVSE
Query Conservation                                          
    
  
 
   

   
    .

 


 
       
Alig confidence 


...






























..
























.














Template Conservation     ...                       
       ..

    
  
      
   
   
 

 
 
 
       
Template Sequence  AKD. . . LEIDFIEFQHDFQVKMLEEDINSMKDIVNYD. . GIFVFNDIAAATVMRALKKRGVSIPQEVQIIGFDNSFIGEL
Template Known Secondary structure  TT...



SSS

GGGGG


TTGGGGGGSS..SSTT

TTTT

SB

T
Template Predicted Secondary structure 

...












..















Template SS confidence 















































































   200.. .......210.........220.........230... ......240.........250.........260.........270....
 
   263......270.........280.........290.........300.........310.......
Predicted Secondary structure 



















Query SS confidence 






















































Query Sequence  LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF
Query Conservation             

 
     
  

  
   
 
              


  
 
Alig confidence 
.....





































.









Template Conservation   ..... 
 



       
  

  
   
 
         
.   

 
 

Template Sequence  L. . . . . YPSLTTINQPIEALAYTIIELLIKIINGEGVLIEDYIM. EVKLIERETT
Template Known Secondary structure  S.....SS

B

T






.



SSS
Template Predicted Secondary structure 
.....











.



Template SS confidence 






















































   275 ....280.........290.........300.........310... ......320...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions