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Job DescriptionP02924
Confidence100.00%DateThu Jan 5 10:57:38 GMT 2012
Rank17Aligned Residues279
% Identity20%Templatec2qvcC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   26...30.........40.........50.........60. ........70.........80.........90.........100...
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Query Sequence  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI. . AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG
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Template Sequence  LTIGVI. GKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQXLESFIAEGVNGIAIAPSDPTAVIPTIKKALE
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   32..... ..40.........50.........60.........70.........80.........90.........100.........110
 
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Query Sequence  YDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK
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Template Sequence  XGIPVVTLDT. . . . . DSPDSGRYVYIGTDNYQAGYTAGLIXKELLGGKG. . . . . KVVIGTGSLTAXNSLQRIQGFKDAIK
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   111........120 .........130.........140.........150.... .....160.........170.........180
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL
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Template Sequence  DSE. . . IEIVDILNDEEDGARAVSLAEAALNAHPDLD. . AFFGVYAYNGPAQALVVKNAG. KVGKVKIVCFDTTPDI. . L
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   181.. ......190.........200.........210.... .....220.........230..... ....240.........250. .
 
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Query Sequence  SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD. . . . . . . . . . . . . VEPPKFTEVTDVVLITRDNFKEELEK
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Template Sequence  QYVKEGVIQATXGQRPYXXGYLSVTVLYLXNKIGVQNTLXXLPKVKVDGKVDYVIDTGVDVVTPENLDEYLKK
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   253......260.........270.........280.........290.........300.........310.........320.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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