Job Description P02924 Confidence 100.00% Date Thu Jan 5 10:57:38 GMT 2012 Rank 49 Aligned Residues 294 % Identity 15% Template c1zvvA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex Resolution 2.98 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																																													.
Query SS confidence															.	.																																													.
Query Sequence		H	K	F	T	K	A	L	A	A	I	G	L	A	.	.	A	V	M	S	Q	S	A	M	A	E	N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	E	V	.	I	K	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A
Query Conservation															.	.																																													.
Alig confidence															.	.																																													.
Template Conservation
Template Sequence		K	K	V	L	E	T	I	E	R	L	G	Y	R	P	N	A	V	A	R	G	L	A	S	K	K	T	T	T	V	G	V	I	I	P	D	I	S	N	I	F	Y	A	E	L	A	R	G	I	E	D	I	A	S	M	Y	K	Y	N	I	I	L	S	N	S	D	Q	N	Q	D	K	Q	L	H	L	L	N	N	M	L	G
Template Known Secondary structure												T													T			S							S		T	T	S																	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S
Query Conservation
Alig confidence																.	.																										.	.	.	.	.	.																												.	.	.	.	.	.
Template Conservation																.	.																										.	.	.	.	.	.																												.	.	.	.	.	.
Template Sequence		K	Q	V	D	G	I	I	F	M	S	G	N	V	T	.	.	E	E	H	V	E	E	L	K	K	S	P	V	P	V	V	L	A	A	S	I	E	S	T	N	Q	.	.	.	.	.	.	I	P	S	V	T	I	D	Y	E	Q	A	A	F	D	A	V	Q	S	L	I	D	S	G	H	K	N	I	.	.	.	.	.	.
Template Known Secondary structure			T		S							S				.	.								T	T		S	S						S				T	T			.	.	.	.	.	.	S																					T	T					.	.	.	.	.	.
Template Predicted Secondary structure																.	.																										.	.	.	.	.	.																												.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A
Query Conservation
Alig confidence																																										.																						.	.
Template Conservation																																										.																						.	.
Template Sequence		A	F	V	S	G	T	L	E	E	P	I	N	H	A	K	K	V	K	G	Y	K	R	A	L	T	E	S	G	L	P	V	R	D	S	Y	I	V	E	G	D	.	Y	T	Y	D	S	G	I	E	A	V	E	K	L	L	E	E	D	E	K	P	T	.	.	A	I	F	V	G	T	D	E	M	A	L	G	V	I	H	G
Template Known Secondary structure						S		T	T	S					T	T													T					T	T	S						.	S	S													S	S	S	S			S	.	.					S	S
Template Predicted Secondary structure																																										.																						.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		T	E	G	Q	G	F	K	A	A	.	D	I	I	G	I	G	I	N	G	V	D	A	V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A	K	D	V	E	P	P	K	F	T	E	V	T	D	V	V	L	I	T	R	D	N	F
Query Conservation											.
Alig confidence											.																	.	.	.	.	.																																							.
Template Conservation																												.	.	.	.	.																																							.
Template Sequence		A	Q	D	R	G	L	N	V	P	N	D	L	E	I	I	G	F	D	N	T	R	L	S	T	M	V	.	.	.	.	.	R	P	Q	L	T	S	V	V	Q	P	M	Y	D	I	G	A	V	A	M	R	L	L	T	K	Y	M	N	K	E	T	V	D	S	S	I	V	E	L	.	P	H	R	I	E	F	R	Q	S	T
Template Known Secondary structure					T	T			T	T	T	T										T	T	T	T	T	S	.	.	.	.	.	S	S																									T					S		S	S				.								T	T
Template Predicted Secondary structure																												.	.	.	.	.																																							.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.						.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.
		318
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		332

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions