Job Description P39276 Confidence 99.98% Date Thu Jan 5 11:58:45 GMT 2012 Rank 4 Aligned Residues 406 % Identity 15% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	I	V	A	I	Q	I	W	E	Y	F	S	F	Y	G	M	R	A	L	L	I	L	Y	L	T	H	Q	L	G	F	D	D	N	H	A	I	S	L	F	S	A	Y	A	S	L	V	Y	V	T	P	I	L	G	G	W	L	A	D	R	L	L	G	N	R	T	A	V	I	A	G	A	L	L	M	T	L	G	H	V
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	.	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A
Template Known Secondary structure		T	T																													T	T			T	T													T	T											S	.
Template Predicted Secondary structure																																																															.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		91	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		V	L	G	I	D	T	.	.	N	S	T	F	S	L	Y	L	A	L	A	I	I	I	C	G	Y	G	L	F	K	S	N	I	S	C	L	L	G	E	L	Y	D	E	N	D	H	R	R	D	G	G	F	S	L	L	Y	A	A	G	N	I	G	S	I	A	A	P	I	A	C	G	L	A	A	Q	W	Y	G	W	H	V
Query Conservation								.	.
Alig confidence								.	.																																			.	.
Template Conservation																																												.	.
Template Sequence		L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	.	.	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q
Template Known Secondary structure		T							T	T																														S	S		G	.	.	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	A	L	A	G	G	G	M	F	I	G	L	L	I	F	L	S	G	H	R	H	F	Q	S	T	R	S	M	D	K	K	A	L	T	S	V	K	F	A	L	P	V	W	S	W	L	V	V	M	L	C	L	A	P	V	F	F	T	L	L	L	E	N	D	W	S	G	Y	L	L	A	I	V	C	L	I	A	A	Q
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S																	T	T																			S						T	T	T					S	S	T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	A	R	M	M	I	K	F	P	E	H	R	R	A	L	W	Q	I	V	L	L	M	F	V	G	T	L	F	W	V	L	A	Q	Q	G	G	S	T	I	S	L	F	I	D	R	F	V	N	R	Q	A	F	N	I	E	V	P	T	A	L	F	Q	S	V	N	A	I	A	V	M	L	A	G	V	V	L	A	W	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																							S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	P	E	S	R	G	N	S	T	L	R	V	W	L	K	F	A	F	G	L	L	L	M	A	C	G	F	M	L	L	A	F	D	A	R	H	A	A	A	D	G	Q	A	S	M	G	V	M	I	S	G	L	A	L	M	G	F	A	E	L	F	I	D	P	V	A	I	A	Q	I	T	R	L	K	M	S	G	V	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	R	F	A	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K
Template Known Secondary structure					S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				S																	T	T											S	S		G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.																		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	I	Y	M	L	A	T	G	A	V	A	N	W	L	A	G	V	V	A	Q	Q	T	T	E	S	Q	I	S	G	M	A	I	A	A	Y	Q	R	F	F	S	Q	M	G	E	W	T	L	A	C	V	A	I	I	V	V	L	A	F	A	T
Query Conservation
Alig confidence																										.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		Y	G	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	.	.	.	.	.	.	.	D	A	A	G	N	I	P	T	A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure										G	G	G														.	.	.	.	.	.	.				T	S	S	G	G	G	G															T	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.								.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.