Job Description P39276 Confidence 100.00% Date Thu Jan 5 11:58:45 GMT 2012 Rank 1 Aligned Residues 445 % Identity 20% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		A	I	Y	Y	I	V	A	I	Q	I	W	E	Y	F	S	F	Y	G	M	R	A	L	L	I	L	Y	L	T	H	Q	L	.	.	.	.	.	.	G	F	D	D	N	H	A	I	S	L	F	S	A	Y	A	S	L	V	Y	V	T	P	I	L	G	G	W	L	A	D	R	L	L	G	N	R	T	A	V	I	A	G	A
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	P	Y	I	I	A	S	E	A	C	E	R	F	S	F	Y	G	M	R	N	I	L	T	P	F	L	M	T	A	L	L	L	S	I	P	E	E	L	R	G	A	V	A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S
Template Known Secondary structure				T																											S		S	S			S	S	S	T	T	T	T	T															T									T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		L	L	M	T	L	G	H	V	V	L	G	I	D	T	N	S	T	F	S	L	Y	L	A	L	A	I	I	I	C	G	Y	G	L	F	K	S	N	I	S	C	L	L	G	E	L	Y	D	E	N	D	H	R	.	R	D	G	G	F	S	L	L	Y	A	A	G	N	I	G	S	I	A	A	P	I	A	C	G	L	A	A
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		L	I	Y	C	V	G	H	A	F	L	A	I	F	E	H	S	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G	D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L	S	M	P	L	L	L
Template Known Secondary structure														T	S	S																		T	T											T		S	T	T	T	T	T																							T	S	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	Y	G	W	H	V	G	F	A	L	A	G	G	G	M	F	I	G	L	L	I	F	L	S	G	H	R	H	F	Q	S	T	R	S	M	D	K	K	A	L	T	S	V	K	F	A	L	P	V	W	S	W	L	V	V	M	L	C	L	A	P	V	F	F	T	L	L	L	E	N	D	W	S	G	Y	L	L	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L	V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A	M	V	L	V	M	G	F	V
Template Known Secondary structure			T	S																						S	S	S	S	S							T	T																			T	G	G	G	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	L	I	A	A	Q	I	I	A	R	M	M	I	K	F	P	E	H	R	R	A	L	W	Q	I	V	L	L	M	F	V	G	T	L	F	W	V	L	A	Q	Q	G	G	S	T	I	S	L	F	I	D	R	F	V	N	R	Q	A	F	N	I	E	V	P	T	A	L	F	Q	S	V	N	A	I	A	V	M	L	A
Query Conservation
Alig confidence																																		.
Template Conservation																																		.
Template Sequence		G	A	G	A	S	L	Q	L	E	R	A	R	K	S	H	P	D	A	A	V	D	G	V	R	S	V	L	R	I	L	V	L	.	F	A	L	V	T	P	F	W	S	L	F	D	Q	K	A	S	T	W	I	L	Q	A	N	D	M	V	K	P	Q	W	F	E	P	A	M	M	Q	A	L	N	P	L	L	V	M	L	L
Template Known Secondary structure			T	G	G	G	T					S			S			S	S	S	S	T	T	T	T	T								.		T	T	S					T	T	T	S	S	T	T	T									S				S	S	S							T	T	S	G	G	G
Template Predicted Secondary structure																																		.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		G	V	V	L	A	W	L	A	S	P	E	S	R	G	N	S	T	L	R	V	W	L	K	F	A	F	G	L	L	L	M	A	C	G	F	M	L	L	A	F	D	A	R	H	A	A	A	D	G	Q	A	S	M	G	V	M	I	S	G	L	A	L	M	G	F	A	E	L	F	I	D	P	V	A	I	.	.	.	A	Q
Query Conservation																																																																													.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	F	N	N	F	V	T	A	L	R	K	M	G	.	.	.	.	.	.	.	.	.	.	.	A	G	I	A	I	T	G	L	S	W	I	V	V	G	T	I	Q	L	M	M	D	G	G	S	A	L	S	I	F	W	Q	I	L	P	Y	A	L	L	T	F	G	E	V	L	V	S	A	T	G	L	E	F	A	Y	S
Template Known Secondary structure		G	G	G	T	T	T									.	.	.	.	.	.	.	.	.	.	.	T											T	T	T	T	T	T	T	T	T	T	T	T					S																						T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.												.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	R	L	K	M	S	G	V	L	T	G	I	Y	M	L	A	T	G	A	V	A	N	W	L	A	G	V	V	A	Q	Q	T	T	E	S	Q	I	S	G	M	A	I	A	A	Y	Q	R	F	F	S	Q	M	G	E	W	T	L	A	C	V	A	I	I	V	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	P	K	A	M	K	G	T	I	M	S	F	W	T	L	S	V	T	V	G	N	L	W	V	L	L	A	N	V	S	V	K	S	P	T	V	T	E	Q	I	V	Q	T	G	M	S	V	T	A	F	Q	M	F	F	F	A	G	F	A	I	L	A	A	I	V	F
Template Known Secondary structure					T	T			T	T	T					G	G	G															T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.