Job Description P0AFI5 Confidence 100.00% Date Thu Jan 5 11:26:25 GMT 2012 Rank 11 Aligned Residues 239 % Identity 26% Template d1xp4a2 SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase Resolution 2.80

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																													.	.	.	.																.	.
Query SS confidence																																													.	.	.	.																.	.
Query Sequence		E	I	A	S	G	S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	.	.	.	.	A	R	L	P	L	D	E	K	L	K	V	D	I	S	Q	.	.	T	P	E	M	K	G	V	Y	S	R	V	R	L	N	S	E
Query Conservation																																													.	.	.	.																.	.
Alig confidence																																													.	.	.	.																.	.
Template Conservation
Template Sequence		T	I	A	A	K	H	A	I	A	V	E	A	N	T	G	K	I	L	Y	E	K	D	A	T	Q	P	V	E	I	A	S	I	T	K	L	I	T	V	Y	L	V	Y	E	A	L	E	N	G	S	I	T	L	S	T	P	V	D	I	S	D	Y	P	Y	Q	L	T	T	N	S	E	A	S	N	I	P	X	E	A	R	N
Template Known Secondary structure				S	B	S	S						T	T	T	T							S		S	S					G	G	G	G															T	S	S		T	T												T	T	T	S			S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																.	.	170	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	H	N	V	S	T	A
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	V	E	E	L	L	E	A	T	L	V	S	S	A	N	S	A	A	I	A	L	A	E	K	I	A	G	S	E	K	D	F	V	D	X	X	R	A	K	L	L	E	W	G	I	Q	D	A	T	V	V	N	T	T	G	L	N	N	E	T	L	G	D	N	I	Y	P	G	S	K	K	D	E	E	N	K	L	S	A
Template Known Secondary structure																													S	S															T	T			S		B				S	S				G	G	G	T	T	T		S		T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure															.																																			.	.	.
Query SS confidence															.																																			.	.	.
Query Sequence		R	D	L	T	K	L	L	I	A	S	K	Q	Y	.	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	Y	R	.	.	.	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	C	L	V	M	R	T	V	I	N	N	K
Query Conservation															.																																			.	.	.
Alig confidence															.																.	.	.	.	.	.														.	.	.
Template Conservation																															.	.	.	.	.	.
Template Sequence		Y	D	V	A	I	V	A	R	N	L	I	K	K	Y	P	Q	V	L	E	I	T	K	K	P	S	S	T	F	A	.	.	.	.	.	.	G	X	T	I	T	S	T	N	Y	X	L	E	G	X	P	A	Y	R	G	G	F	D	G	L	K	T	G	T	T	D	K	A	G	E	S	F	V	G	T	T	V	E	K	G	X
Template Known Secondary structure																G	G	G					T		S					T	.	.	.	.	.	.	T						S		T	T	S	T	T	S	T	T			T	T										T	T	T											T	T
Template Predicted Secondary structure																															.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		P	V	A	L	V	V	M	D	A	F	G	K	Y	T	.	.	.	.	H	F	A	D	A	S	R	L	R	T	W	I	E	T	G	K
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		R	V	I	T	V	V	L	N	A	D	H	Q	D	N	N	P	Y	A	R	F	T	A	T	S	S	L	X	D	Y	I	S	S	T	F
Template Known Secondary structure													B	T	T	B	T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions