Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFI5
Confidence100.00%DateThu Jan 5 11:26:25 GMT 2012
Rank8Aligned Residues255
% Identity22%Templated1tvfa2
SCOP infobeta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70......... 80.........90....
Predicted Secondary structure 































....







..
Query SS confidence 


























































. . . .














. .
Query Sequence  PQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD. . . . ARLPLDEKLKVDISQ. .
Query Conservation    
              
 
 



 
  

 

   
 
     

 





  


....    

  



   ..
Alig confidence 


























































....














..
Template Conservation    
                     
    

 

  

 
     








  


 
  


 

  
 
      
Template Sequence  VTPVQAANQYGYAGLSAAYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYI
Template Known Secondary structure  S
TT
TT

GGG

STTS
STT

B

GGGTTSS
TT


Template Predicted Secondary structure 








































Template SS confidence 















































































   2930.........40.........50.........60.........70.........80.........90.........100........
 
   95....100.........110.........120.........130.........140.........150.........160.........
Predicted Secondary structure  .



























....
Query SS confidence  .










































































. . . .
Query Sequence  . TPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSV. . . .
Query Conservation  .      
   
  
   

 


 
 
  
 



  


 



   

  

  
  


  
 
 

 

  ....
Alig confidence  .










































































....
Template Conservation         
   
  
   

 


  

  
 



  

  


    

  

  
  

   
 
 
  

      
Template Sequence  MSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLR
Template Known Secondary structure  TT
TTS





TT
S

SSSTT
TT
B
SSSSSS
G
Template Predicted Secondary structure 




























Template SS confidence 















































































   109110.........120.........130.........140.........150.........160.........170.........180........
 
   170.........180....... ..190.........200.........210.........220.. .......230....
Predicted Secondary structure  ...........





.














...




Query SS confidence  . . . . . . . . . . .

















.


































. . .











Query Sequence  . . . . . . . . . . . HNVSTARDLTKLLIASKQ. YPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYR. . . DNWNIQLTKTGF
Query Conservation  ........... 
 


 


 
      . 
    
                    
 
 

  ...    
 
 


 
Alig confidence  ...........

















.















......












...











Template Conservation              
 


 


 
        
 
            ......     
 
 

        
  
 


 
Template Sequence  SFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTH. . . . . . AVTYYTFNFSLEGAKMSLPGTDGLKTGS
Template Known Secondary structure  GGS
GGGTT



BB

TTT
SS
T......T




TTSTTSTT

TT
Template Predicted Secondary structure 





















......
















Template SS confidence 















































































   189190.........200.........210.........220.........230.... .....240.........250.........260..
 
   235....240.........250.........260..... ....270.........280.
Predicted Secondary structure 











......


Query SS confidence 






























. . . . . .















Query Sequence  TNAAGHCLVMRTVINNKPVALVVMDAFGKYT. . . . . . HFADASRLRTWIETGK
Query Conservation 
  

   
  
   
   
 



      ......
  
   
 
      
Alig confidence 






























......















Template Conservation 
  

   
      
   
 


             
      


  
  
Template Sequence  SDTANYNHTITTKRGKFRINQVIMGAGDYKNLGGEKQRNMMGNALMERSFDQY
Template Known Secondary structure  TTTTTSBTTTTB

Template Predicted Secondary structure 



















Template SS confidence 




















































   263......270.........280.........290.........300.........310.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions