Job Description P0AFI5 Confidence 98.58% Date Thu Jan 5 11:26:25 GMT 2012 Rank 71 Aligned Residues 222 % Identity 17% Template d1rgya_ SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase Resolution 1.52

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.													.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		E	I	A	S	G	S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	.	.	.	.	.	.	.	.	.	.	.	.	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	.	.	.	.	D	A	R	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P	E	M	K	G
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence													.	.									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.											.	.	.
Template Conservation													.	.																																																								.	.	.
Template Sequence		A	I	P	G	M	A	V	A	I	I	Y	.	.	E	G	K	P	Y	Y	F	T	W	G	K	A	D	I	A	N	N	H	P	V	T	Q	Q	T	L	F	E	L	G	S	V	S	K	T	F	N	G	V	L	G	G	D	A	I	A	R	G	E	I	K	L	S	D	P	V	.	.	.	T	K	Y	W	P	E	L	T	G
Template Known Secondary structure		T		S									.	.	T	T												T	T	T	T					T	T		B				G	G	G															T	T	S			T	T	S	B		.	.	.					T	T
Template Predicted Secondary structure													.	.																																																								.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.																																					.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		V	Y	S	R	V	R	L	N	S	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	A	A	A	S	L	A	H	H	Y	.	P	G	G	Y	K	A	F
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence			.	.	.	.	.												.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation			.	.	.	.	.												.	.	.
Template Sequence		K	.	.	.	.	.	Q	W	R	G	I	S	L	L	H	L	A	.	.	.	T	Y	T	A	G	G	L	P	L	Q	I	P	D	D	I	T	D	K	A	A	L	L	R	F	Y	Q	N	W	Q	P	Q	W	T	P	G	A	K	R	L	Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K	P	S	G	M	S	Y
Template Known Secondary structure		G	.	.	.	.	.	G	G	T	T		B						.	.	.	T	T		S	S				S	S			T	T			S														S	S		T	T	S																	T	T	T	T	T	S
Template Predicted Secondary structure			.	.	.	.	.												.	.	.
Template SS confidence
		99						100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		144	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.																												.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.							.
Predicted Secondary structure										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query Sequence		I	K	A	M	N	A	K	A	.	K	S	L	G	M	N	N	T	R	F	V	E	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	V	H	N	V	S	T	A	R	D	L	T	K	L	L	I	A	S	K	Q	Y	.	.	.	.	.	.	P
Query Conservation										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Alig confidence										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.																				.	.	.	.	.	.
Template Conservation																																																					.	.	.
Template Sequence		E	E	A	M	T	R	R	V	L	Q	P	L	K	L	A	H	T	W	I	T	V	P	Q	S	E	Q	K	N	Y	A	W	G	Y	R	E	G	K	P	V	H	V	S	P	G	Q	L	D	A	E	A	Y	.	.	.	G	V	K	S	S	V	I	D	M	A	R	W	V	Q	A	N	M	D	A	S	H	V	Q	E	K	T
Template Known Secondary structure									T	T	T	T	T	T		T	T			S	S			G	G	G	G	G	G	B						T	T									T	T					T	.	.	.																			G	G	G			S
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.																											.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	Y	R	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	C	L	V
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																																																													.
Template Sequence		L	Q	Q	G	I	E	L	A	Q	S	R	Y	W	R	I	G	D	M	Y	Q	G	L	G	W	E	M	L	N	W	P	L	K	A	D	S	I	I	N	G	S	D	S	K	V	A	L	A	A	L	P	A	V	E	V	N	P	P	V	P	A	V	K	A	S	W	V	H	K	T	G	S	T	G	G	F	.	G	S	Y	V
Template Known Secondary structure										T	S						T	T					S	S						S	S										T	S					T	S															S	S										S	S		.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	T	V	I	N	N	K	P	V	A	L	V	V	M	D	A	F	G	K	Y	T	H	F	A	D	A	S	R	L	R	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	V	P	E	K	N	L	G	I	V	M	L	A	N	K	S	Y	P	N	P	V	R	V	E	A	A	W	R	I	L	E
Template Known Secondary structure					G	G	G	T								S	B
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions