Job Description P0AFI5 Confidence 98.02% Date Thu Jan 5 11:26:25 GMT 2012 Rank 86 Aligned Residues 220 % Identity 16% Template c3tg9A_ PDB info PDB header:penicillin binding protein Chain: A: PDB Molecule:penicillin-binding protein; PDBTitle: the crystal structure of penicillin binding protein from bacillus2 halodurans Resolution 2.20 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.														.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	A	S	G	S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	H	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	.	.	.	.	D	A	R	L	P	L	D	E	K	L	K	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.
Template Sequence		K	L	S	G	T	A	L	M	K	K	G	.	.	.	E	D	I	P	F	I	A	S	L	G	F	A	N	R	A	E	R	I	P	N	E	H	H	T	R	F	G	I	A	S	G	C	K	L	F	T	A	I	A	I	C	Q	L	V	E	A	G	K	L	S	F	D	T	P	L	S	D	W	L	D	A	P	F	P	N	V
Template Known Secondary structure		T										T	.	.	.	T	S								S				T	T	T	T					T	T		B				G	G	G	G															T	S			T	T		B	G	G	G	T		S	S			T	T
Template Predicted Secondary structure													.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
																																90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	S	Q	T	P	E	M	K	G	V	Y	S	R	V	R	L	N	S	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.
Template Sequence		T	I	H	H	L	L	T	H	T	S	G	V	P	D	Y	F	D	E	D	L	W	K	D	V	P	M	Y	H	L	R	R	L	K	D	F	L	P	L	F	Q	H	A	P	M	K	F	P	P	G	H	R	F	H	Y	N	N	A	G	F	I	L	L	G	L	.	.	.	.	.	.	.	V	V	E	S	V	S	G	V	T
Template Known Secondary structure		B						T	T		S					S					G	G	G	T	S		G	G	G			S	G	G	G	G	G	G	G	T	T	T	S				S		T	T	S															.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.																														.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	L	S	V	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	T	A	R	D	L	T	K	L	L	I	A	S	K	Q	.	.	.
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence							.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation							.	.
Template Sequence		F	Q	E	Y	V	.	.	E	A	N	V	F	Q	R	A	G	M	H	E	S	G	Y	F	A	F	D	T	L	P	A	K	T	A	L	G	Y	I	D	L	E	D	G	S	W	K	T	N	L	Y	S	L	P	V	I	G	G	S	D	G	G	A	Y	V	T	A	E	D	M	M	K	L	W	L	A	L	M	R	H	E	L
Template Known Secondary structure							.	.				T					T		T	T		B			B	G	G	G			S	S	B								T	T	S					S	T	T	T	S		S	B			S	S	S																		T	T	S	S
Template Predicted Secondary structure							.	.
Template SS confidence
		170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
			188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Y	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	Y	R	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	C	L	V	M	R	T	V	I	N	N	K	P	V	A	L	V	V	M	D	A	F	G	K	Y	T	H
Query Conservation		.
Alig confidence		.																															.	.	.	.	.																.
Template Conservation																																	.	.	.	.	.																.
Template Sequence		L	N	E	T	Y	T	Q	K	L	L	T	P	H	V	H	C	E	D	D	D	Y	Y	G	Y	G	V	W	I	K	Q	Q	.	.	.	.	.	D	G	A	I	S	K	Y	H	V	M	G	Y	D	P	G	.	V	C	F	H	S	A	F	Y	P	T	S	N	G	I	V	V	V	C	A	N	Q	S	S	G	A	Y	D	V
Template Known Secondary structure		S									T	S							T	T					S	S	S						.	.	.	.	.	T	T												T	T	.									T	T	T	T								S	B	S	S
Template Predicted Secondary structure																																	.	.	.	.	.																.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		267	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	D	A	S	R	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	A	I	E	A	L	F
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions