Job Description P0AFI5 Confidence 99.00% Date Thu Jan 5 11:26:25 GMT 2012 Rank 61 Aligned Residues 229 % Identity 20% Template c3pbqA_ PDB info PDB header:hydrolase/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem Resolution 1.70 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	A	R	L	.	P	L	D	E	K	L	K	V	D	I	S	Q	T	P	E	M	K
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		S	L	V	I	M	D	V	K	T	G	E	I	L	A	M	T	N	Q	P	T	Y	N	P	N	N	R	R	N	L	Q	P	A	A	M	R	N	R	A	M	I	D	V	F	E	P	G	S	T	V	K	P	F	S	M	S	A	A	L	A	S	G	R	W	K	P	S	D	I	V	D	V	Y	P	G	T	L	Q	I	G	R
Template Known Secondary structure								T	T	T		B								S				T	T			S	S			T	T	T	T									B	B		G	G	G	G											T	T	S			T	T						T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure												.																																																																	.	.	.	.	.
Query SS confidence												.																																																																	.	.	.	.	.
Query Sequence		G	V	Y	S	R	V	R	L	N	S	.	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	L	S	V	H	N	V	S	.	.	.	.	.
Query Conservation												.																																																																	.	.	.	.	.
Alig confidence												.							.	.	.	.																			.	.	.	.	.	.																															.	.	.	.	.
Template Conservation																			.	.	.	.																			.	.	.	.	.	.
Template Sequence		Y	T	I	R	D	V	S	R	N	S	R	Q	L	D	L	T	G	.	.	.	.	I	L	I	K	S	S	N	V	G	I	S	K	I	A	F	D	I	G	.	.	.	.	.	.	A	E	S	I	Y	S	V	M	Q	Q	V	G	L	G	Q	D	T	G	L	G	F	P	G	E	R	V	G	N	L	P	N	H	R	K	W
Template Known Secondary structure							S	S				S							.	.	.	.				T	T														.	.	.	.	.	.											T	T	T	T	S			S				T	T					B					S	S
Template Predicted Secondary structure																			.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.							.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
																		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	R	D	L	T	K	L	L	I	A	S	K	Q	Y	.	.	.	.	.	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																					.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		P	K	A	E	T	A	T	L	A	Y	G	Y	G	L	S	V	T	A	I	Q	L	A	H	A	Y	A	A	L	A	N	D	G	K	S	V	P	L	S	M	T	R	V	D	R	V	P	D	G	V	Q	V	I	S	P	E	V	.	.	.	.	A	S	T	V	Q	G	M	L	Q	Q	V	V	E	A	Q	G	G	V	F	R
Template Known Secondary structure											T	T		S		B	B														T	T	T						B	S	B			S	S								S					.	.	.	.														S	T	T	S		G	G
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.					.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.								.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																						.	.																			.	.	.	.	.	.	.
Query SS confidence																						.	.																			.	.	.	.	.	.	.
Query Sequence		Y	R	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	.	.	C	L	V	M	R	T	V	I	N	N	K	P	V	A	L	V	V	M	.	.	.	.	.	.	.	D	A	F	G	K	Y	T	H	F	A	D	A	S	R	L	R	T	W	I	E	T	G	K	V	M	P
Query Conservation																						.	.																			.	.	.	.	.	.	.
Alig confidence																						.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	V	P	G	Y	H	A	A	G	K	S	G	T	A	R	K	N	A	Y	R	S	L	F	A	G	F	A	P	A	T	D	P	R	I	A	M	V	V	V	I	D	E	P	S	K	A	G	Y	F	G	G	L	V	S	A	P	V	F	S	K	V	M	A	G	A	L	R	L	M	N	V	P
Template Known Secondary structure		G		B	T	T	B																							S	T	T	S														S	S								T															T	T
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions