Job Description P0AFI5 Confidence 100.00% Date Thu Jan 5 11:26:25 GMT 2012 Rank 4 Aligned Residues 251 % Identity 24% Template c3mfdB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacb; PDBTitle: the structure of the beta-lactamase superfamily domain of d-alanyl-d-2 alanine carboxypeptidase from bacillus subtilis Resolution 1.75 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	S	G	S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	A	R	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P	E	M	K	G	V	Y	S	R	V	R	L	N	S	E	I	S	R	K	D	M
Query Conservation
Alig confidence																																													.																.
Template Conservation																																													.																.
Template Sequence		D	V	S	A	K	S	A	I	I	I	D	G	A	S	G	R	V	L	Y	A	K	D	E	H	Q	K	R	R	I	A	S	I	T	K	I	X	T	A	V	L	A	I	E	.	S	G	K	X	D	Q	T	V	T	V	S	A	N	A	V	.	R	T	E	G	S	A	I	Y	L	T	E	G	Q	K	V	K	L	K	D	L
Template Known Secondary structure				S		S							T	T	T								S	T	T			B			G	G	G	G											.	T	T		T	T	S										.	T			S	S						T	T
Template Predicted Secondary structure																																													.																.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	L	S	V	.	.	H	N	V	S	T	A	R	D	L	T	K	L	L	I	A	S	K	Q	Y	P	L	I	G	Q	L
Query Conservation																																																							.	.
Alig confidence																																																							.	.
Template Conservation
Template Sequence		V	Y	G	L	X	L	R	S	G	N	D	A	A	V	A	I	A	E	H	V	G	G	S	L	D	G	F	V	Y	X	X	N	Q	K	A	E	Q	L	G	X	K	N	T	R	F	Q	N	P	H	G	L	D	D	H	E	N	H	Y	S	T	A	Y	D	X	A	I	L	T	K	Y	A	X	K	L	K	D	Y	Q	K	I
Template Known Secondary structure																							S	S																T		T	T		B		S	S	S	S			S		S	S	S		B	B													T	T	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	Y	R	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	C	L	V	M	R	T	V	I	N	N	K	P	V	A	L	V	V	M	D	A	F	G	K	Y	T	H	F	A	D	A	S	R	L	R
Query Conservation
Alig confidence															.	.	.	.																																																				.	.	.
Template Conservation															.	.	.	.																																																				.	.	.
Template Sequence		S	G	T	K	I	Y	K	A	E	T	X	E	S	.	.	.	.	V	W	K	N	K	N	K	L	L	T	X	L	Y	P	Y	S	T	G	G	K	T	G	Y	T	K	L	A	K	R	T	L	V	S	T	A	S	K	D	G	I	D	L	I	A	V	T	I	N	D	P	N	.	.	.	D	W	D	D	H	X	K	X	F
Template Known Secondary structure			T		S					S	S	S	S		.	.	.	.					S						T	T		T	T										T	T	T											T	T									S		T	T	.	.	.
Template Predicted Secondary structure															.	.	.	.																																																				.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	I	E	T	G	K	V	M	P	V	P	A	A	A	L	S	Y	K	K	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Y	V	F	E	H	Y	Q	T	Y	L	I	A	K	D	I	P	K	L	K	G	T
Template Known Secondary structure																		G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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