Job Description P0AFI5 Confidence 100.00% Date Thu Jan 5 11:26:25 GMT 2012 Rank 6 Aligned Residues 276 % Identity 22% Template c3humB_ PDB info PDB header:hydrolase/antibiotics Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 from2 staphylococcus aureus col in complex with cefotaxime Resolution 2.30 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		P	Q	A	V	A	K	T	A	A	A	T	T	A	S	Q	P	E	I	A	S	G	S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	.	.	.	.	A	R	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P
Query Conservation																																																													.	.	.	.
Alig confidence																													.																																.	.	.	.
Template Conservation																													.
Template Sequence		T	P	V	Q	A	A	N	Q	Y	G	Y	A	G	L	S	A	A	Y	E	P	T	S	A	V	N	V	S	.	Q	T	G	Q	L	L	Y	Q	Y	N	I	D	T	K	W	N	P	A	S	M	T	K	L	M	T	M	Y	L	T	L	E	A	V	N	K	G	Q	L	S	L	D	D	T	V	T	M	T	N	K	E	Y	I
Template Known Secondary structure										T	T		T	T			G	G	G			S							.	T	T		B						S	T	T						G	G	G	G														T	T	S	S		T	T
Template Predicted Secondary structure																													.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		97	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure						.	.	.																																																																							.	.	.
Query SS confidence						.	.	.																																																																							.	.	.
Query Sequence		E	M	K	G	.	.	.	V	Y	S	R	V	R	L	N	S	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	L	S	V	H	.	.	.
Query Conservation						.	.	.																																																																							.	.	.
Alig confidence						.	.	.																																																																							.	.	.
Template Conservation
Template Sequence		M	S	T	L	P	E	L	S	N	T	K	L	Y	P	G	Q	V	W	T	I	A	D	L	L	Q	I	T	V	S	N	S	S	N	A	A	A	L	I	L	A	K	K	V	S	K	N	T	S	D	F	V	D	L	M	N	N	K	A	K	A	I	G	M	K	N	T	H	F	V	N	P	T	G	A	E	N	S	R	L	R
Template Known Secondary structure			T	T		T	T								T	T															S														S	S	S																T		T	T		B		S	S	S	S		S						G
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
														171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																		.																																				.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																		.																																				.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	N	V	S	T	A	R	D	L	T	K	L	L	I	A	S	K	Q	.	Y	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	Y	R	.	.	.	D	N	W	N	I	Q	L	T	K	T	G	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																		.																																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																		.																	.	.	.	.	.	.														.	.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		S	F	A	P	T	K	Y	K	D	Q	E	R	T	V	T	T	A	R	D	Y	A	I	L	D	L	H	V	I	K	E	T	P	K	I	L	D	F	T	K	Q	L	A	P	T	T	H	.	.	.	.	.	.	A	V	T	Y	Y	T	F	N	F	S	L	E	G	A	K	M	S	L	P	G	T	D	G	L	K	T	G	S
Template Known Secondary structure		G	G	S		G	G	G	T	T					B																		T	T						T		S	S				T	.	.	.	.	.	.	T						S		T	T	S	T	T	S	T	T			T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.							.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																						.
Query SS confidence																														.	.	.	.	.	.																						.
Query Sequence		T	N	A	A	G	H	C	L	V	M	R	T	V	I	N	N	K	P	V	A	L	V	V	M	D	A	F	G	.	.	.	.	.	.	K	Y	T	H	F	A	D	A	S	R	L	R	T	W	I	E	T	G	K	V	M	.	P	V	P	A	A	A	L	S	Y	K	K	Q	K	A	A	Q	M	A	A	A
Query Conservation																														.	.	.	.	.	.																						.
Alig confidence																														.	.	.	.	.	.																						.
Template Conservation
Template Sequence		S	D	T	A	N	Y	N	H	T	I	T	T	K	R	G	K	F	R	I	N	Q	V	I	M	G	A	G	D	Y	K	N	L	G	G	E	K	Q	R	N	M	M	G	N	A	L	M	E	R	S	F	D	Q	Y	K	Y	V	K	I	L	S	K	G	E	Q	R	I	N	G	K	K	Y	Y	V	E	N	D
Template Known Secondary structure			T	T	T											T	T											S	B	T	T	T	T	B																												S						T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions