Job Description P0AFI5 Confidence 98.88% Date Thu Jan 5 11:26:25 GMT 2012 Rank 66 Aligned Residues 205 % Identity 18% Template c3fwlA_ PDB info PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli Resolution 3.09 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.													.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.																											.	.																							.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.																											.	.																							.	.	.	.
Query Sequence		S	A	M	I	V	D	L	N	T	N	K	V	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	S	N	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	A	R	.	.	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P	E	M	K	G	V	Y	S	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.																											.	.																							.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																											.	.																							.	.	.	.
Template Conservation
Template Sequence		A	I	V	V	V	D	R	F	S	G	E	V	R	A	X	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	X	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N
Template Known Secondary structure								T	T	T		B							S	S	S	S	T	T		S	S		T	T	T	S						G	G	G	G										T	S		S	S			T	T													S	S	S
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
					104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																						.
Query SS confidence		.	.	.																																																						.
Query Sequence		.	.	.	R	V	R	L	N	S	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	.	N	N	T	R	F	V	E	P	T	G	L	S	V	H	N	V	S	T	A	R	D	L	T
Query Conservation		.	.	.																																																						.
Alig confidence		.	.	.														.	.	.	.																		.	.	.	.	.	.														.
Template Conservation																		.	.	.	.																		.	.	.	.	.	.
Template Sequence		D	D	R	R	Y	S	E	S	G	R	V	X	L	V	D	A	.	.	.	.	L	T	R	S	X	N	V	P	T	V	N	L	G	X	A	L	G	.	.	.	.	.	.	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	X	L	L	G	A	L	N	L	T	P	I	E	V	A
Template Known Secondary structure		T	T					T	T	S								.	.	.	.			T	T		S												.	.	.	.	.	.												T			G	G	G				S	T					T
Template Predicted Secondary structure																		.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.					.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.							.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.																													.	.	.	230	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	L	I	A	S	K	Q	Y	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	Y	R	D	N	W	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	L	T	K
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		Q	A	F	Q	T	I	A	S	.	.	.	.	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	X	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K
Template Known Secondary structure									T	.	.	.	.	T	S						B	S							S	S	S														S																		T	S	T	T								T	T	S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		623	.	.	.	.	.	.	630					.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	F	T	N	A	A	G	H	C	L	V	M	R	T	V	I	N	N	K	P	V	A	L	V	V	M	D	A	F	G
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		T	G	T	T	N	N	N	V	D	T	W	F	A	G	I	.	.	D	G	S	T	V	T	I	T	W	V	G	R	D	N
Template Known Secondary structure						G	G	G	S								.	.		S	S										T	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.			.	.	.	.	.	.	720	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions