Job Description P0AFI5 Confidence 98.99% Date Thu Jan 5 11:26:25 GMT 2012 Rank 62 Aligned Residues 201 % Identity 16% Template c3equB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		42	.	.	.	.	.	.	.	50	.	.	.	.	.						.	.	.	.	60	.																	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		S	A	M	I	V	D	L	N	T	N	K	V	I	Y	.	.	.	.	.	S	N	H	P	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	.	A	R	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P	E	M	K
Query Conservation																.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence																.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.														.	.
Template Conservation																																																																											.	.
Template Sequence		T	V	V	V	L	D	A	R	T	G	E	I	L	A	L	A	N	T	P	A	Y	D	P	N	R	P	G	R	A	D	S	E	Q	R	R	N	R	A	V	T	D	X	I	E	P	G	S	A	I	K	P	F	V	I	A	K	A	L	D	A	G	K	T	D	L	N	E	R	L	N	T	Q	P	.	.	Y	K	I	G	P
Template Known Secondary structure								T	T	T		B								S				T	T	S		T	T															B			G	G	G	G												T	S	S		S	S						S		.	.				T	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		G	V	Y	S	R	V	R	L	N	S	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	L	S	V	H	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.																.	.	.	.	.	.
Template Sequence		S	P	V	R	D	T	H	V	Y	P	S	L	D	V	R	G	I	X	Q	.	.	.	.	K	S	S	N	V	G	T	S	K	L	S	A	R	F	G	.	.	.	.	.	.	A	E	E	X	Y	D	F	Y	H	E	L	G	I	G	V	R	X	H	S	G	F	P	G	E	T	A	G	L	L	R	N	W	R	R	W	R
Template Known Secondary structure							S	S			S										.	.	.	.		T										T	T	S		.	.	.	.	.	.											T	T	T	T	S					S		T	T									G	G	G
Template Predicted Secondary structure																					.	.	.	.																.	.	.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360					.	.	.	.	.	.	.	.	.	370	.	.	.	.	.							.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
														171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220																	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	N	V	S	T	A	R	D	L	T	K	L	L	I	A	S	K	Q	Y	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		P	I	E	Q	A	T	X	S	F	G	Y	G	L	Q	L	S	L	L	Q	L	A	R	A	Y	T	A	L	T	H	.	.	.	.	D	G	V	L	L	P	L	S	F	E	K	Q	A	V	A	P	Q	G	K	R	I	F	K	E	T	A	R	E	V	R	N	L	X	V	S	V	T	E	P	G	G	T	G	T	A	G	A
Template Known Secondary structure										T	T		S			B														T	.	.	.	.	T	T						B	S	B			S	S								S													T	T	T	S	T	T	S	S		G	G	G
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440					.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	.	.	C	L	V	M	R	T	V	I	N	N	K	P	V	A	L	V	V	M
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		V	D	G	F	D	V	G	A	K	T	G	T	A	R	K	N	K	H	V	A	T	F	I	G	F	A	P	A	K	N	P	R	V	I	V	A	V	T
Template Known Secondary structure			T	T	S																							S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions