Job Description P0AFI5 Confidence 100.00% Date Thu Jan 5 11:26:25 GMT 2012 Rank 3 Aligned Residues 259 % Identity 24% Template c3a3jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pbp5; PDBTitle: crystal structures of penicillin binding protein 5 from2 haemophilus influenzae Resolution 2.15 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.																		.	.
Query SS confidence																																																	.	.	.	.																		.	.
Query Sequence		A	S	Q	P	E	I	A	S	G	S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	.	.	.	.	A	R	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P	.	.	E	M	K	G	V	Y	S	R	V	R
Query Conservation																																																	.	.	.	.																		.	.
Alig confidence																																																	.	.	.	.																		.	.
Template Conservation
Template Sequence		V	T	P	P	Q	I	T	A	Q	T	Y	V	L	M	D	Y	N	S	G	A	I	L	T	A	L	N	P	D	Q	R	Q	Y	P	A	S	L	T	K	M	M	T	S	Y	V	V	G	V	A	L	K	Q	G	K	I	H	N	T	D	M	V	T	I	G	E	S	A	W	G	R	N	F	P	D	S	S	K	M	F	L	D
Template Known Secondary structure									S	S							T	T	T								S	T	T	S		B			G	G	G															T	T	S	S		T	T							T	T	T		G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		L	N	S	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	L	S	.	V	H	N	V	S	T	A	R	D	L	T	K	L	L	I	A	S
Query Conservation																																																																.
Alig confidence																																																																.
Template Conservation
Template Sequence		L	N	T	Q	V	S	V	A	D	L	N	R	G	V	I	V	V	S	G	N	D	A	T	V	A	L	A	E	H	I	S	G	N	V	P	N	F	V	E	T	M	N	K	Y	V	Q	Q	F	G	L	K	N	T	N	F	T	T	P	H	G	L	D	D	P	N	Q	Y	S	S	A	R	D	M	A	I	I	G	A	H	I
Template Known Secondary structure		T	T																														S	S															T	T		S	S		B		S	S	S	S					T	T		B	B
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		186	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure				.																																																												.
Query SS confidence				.																																																												.
Query Sequence		K	Q	.	Y	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	Y	R	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	C	L	V	M	R	T	.	V	I	N	N	K	P	V	A	L	V	V	M	D	A	F	G	K
Query Conservation				.																																																												.
Alig confidence				.																	.	.	.	.	.	.																																						.
Template Conservation																					.	.	.	.	.	.
Template Sequence		I	R	D	L	P	E	E	Y	K	I	Y	S	E	K	D	F	T	F	N	.	.	.	.	.	.	K	I	K	Q	P	N	R	N	G	L	L	W	D	K	T	I	N	V	D	G	M	K	T	G	H	T	S	Q	A	G	Y	N	L	V	A	S	A	T	T	S	N	N	M	R	L	I	S	V	V	M	G	V	P	T	Y
Template Known Secondary structure										G	G	G	G							T	.	.	.	.	.	.	T						S		G	G	G	G		T	T	S											T	T	T											T	T												S	S
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Y	T	H	F	A	D	A	S	R	L	R	T	W	I	E	T	G	K	V	M	.	P	V	P	A	A	A	L	S	Y	K	K	Q	K	A
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		K	G	R	E	V	E	S	K	K	L	L	Q	W	G	F	A	N	F	E	T	F	K	T	L	E	A	G	K	E	I	S	E	Q	R	V
Template Known Secondary structure																											T	T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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