Job Description P0AFI5 Confidence 99.96% Date Thu Jan 5 11:26:25 GMT 2012 Rank 43 Aligned Residues 243 % Identity 23% Template c3a3eB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv) Resolution 2.40 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.
Predicted Secondary structure																																																					.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	Q	P	E	I	A	S	G	S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	A	R	L	P	.	.	.	L	D	E	K	L	K	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	K	L	P	E	G	S	N	A	G	V	I	A	K	N	I	N	Q	N	Q	I	I	A	D	Y	N	G	S	T	F	M	L	P	A	S	T	Q	K	V	F	T	A	V	A	A	K	L	A	L	G	D	Q	F	Q	F	E	T	A	L	L	S	N	G	K	I	Q	N	G	N	L	D	G	N	L	I	V	S	F	T	G
Template Known Secondary structure		T	T	S		T	T										T	T	T	T							S	T	T			B			G	G	G	G												T		T	T											S		B		S	S				S
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	D	L	T	R	G	Q	L	Y	S	L	L	A	E	L	K	K	Q	G	I	K	K	I	N	G	D	L	V	L	D	T	S	V	F	P	P	A	A	A	N	I	D	N	N	C	F	Y	A	E	L	D	A	N	K	N	P	G	E	I	V	K	I	N	V	P	A	Q	F	P	I	Q	V	F	G	Q	V	Y	V	A
Template Known Secondary structure			S	S																T	T		S				S								B					S	S			S	T	T										S		S	S	S	B							T	T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
																																																																	92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	Q	T	P	E	M	K	G	V	Y	S	R	V	R	L	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	N	E	A	P	Y	C	Q	L	D	V	V	V	H	D	N	N	R	Y	Q	V	K	G	C	L	A	R	Q	Y	K	P	F	G	L	S	F	A	V	Q	N	T	D	A	Y	A	A	A	I	I	Q	R	Q	L	R	K	L	G	I	E	F	N	G	K	V	L	L	P	Q	K	P	Q	Q	G	Q	L	L	A	K	H
Template Known Secondary structure			S	S	S	S	S	S									G	G	G												S	S									S																	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.								.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.																				.	.
Query SS confidence																															.	.	.	.	.	.	.																				.	.
Query Sequence		S	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	.	.	.	.	.	.	.	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	.	.	N	N	T	R	F	V	E	P	T	G	L	S	V	H	N	V	S	T	A	R	D	L	T
Query Conservation																															.	.	.	.	.	.	.																				.	.
Alig confidence																															.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		L	S	K	P	L	P	D	L	L	K	K	M	M	K	K	S	D	N	Q	I	A	D	S	L	F	R	A	V	A	F	N	Y	Y	K	R	P	A	S	F	Q	L	G	T	L	A	V	K	S	I	L	Q	K	Q	G	I	R	F	G	N	S	I	L	A	D	G	S	G	L	S	R	H	N	L	V	A	P	K	T	M	L
Template Known Secondary structure																	T																		S	S		B															T	T	T				T	T		B				S	S	S			T	T		B	B
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		K	L	L	I	A	S	K	Q	Y	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	Y	R	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	C	L	V	M	R	T	V	.	I	N	N	K	P	V	A	L	V	V	M
Query Conservation																																																																						.
Alig confidence																			.	.	.	.	.	.																																			.											.
Template Conservation																			.	.	.	.	.	.																																			.
Template Sequence		S	V	L	E	Y	I	A	K	N	E	D	K	L	H	L	M	E	.	.	.	.	.	.	T	F	P	I	A	G	V	D	G	T	I	S	G	R	G	G	L	I	S	P	P	L	V	K	N	V	I	A	K	T	G	S	L	K	.	G	V	Y	N	L	A	G	F	M	T	N	A	R	G	E	K	V	A	F	V	Q	F
Template Known Secondary structure										T							G	G	.	.	.	.	.	.	G	S		B	T	T	T	S	G	G	G	S	S		G	G	G	S	S	T	T	T	T	T	T									T	.	T											T	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.																																			.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.							.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		259				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		D	.	.	.	A	F	G	K	Y	T	H	F	A	D	A	S	R	L	R	T	W	I	E	T	G	K	V
Query Conservation			.	.	.
Alig confidence			.	.	.
Template Conservation
Template Sequence		I	N	G	Y	S	T	G	D	L	E	S	K	T	K	R	A	P	L	V	Q	F	E	R	N	L	Y	N
Template Known Secondary structure				S				S		T	T
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions