Job Description P0AFI5 Confidence 99.18% Date Thu Jan 5 11:26:25 GMT 2012 Rank 56 Aligned Residues 241 % Identity 17% Template c2wadB_ PDB info PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) Resolution 2.18 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60																		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		Q	P	E	I	A	S	G	S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	H	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	A	R	.	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		A	K	Y	S	E	G	V	Y	A	V	A	L	N	P	Q	T	G	A	V	L	S	M	S	G	L	K	H	D	L	K	T	G	E	L	T	P	D	S	L	G	T	V	T	N	V	F	V	P	G	S	V	V	K	A	A	T	I	S	S	G	W	E	N	G	V	L	S	G	N	Q	T	L	T	D	Q	P	I	V	F	Q
Template Known Secondary structure		T	T	T											T	T	T		B											T	T	T							T	T							B			G	G	G	G											T	T	S			S	S								B		B	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.													.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure															.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	K	G	V	Y	S	R	V	R	L	N	S	.	.	.	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F
Query Conservation															.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.											.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		G	S	A	P	I	Y	S	W	Y	K	L	A	Y	G	S	F	P	I	T	A	V	E	A	L	E	Y	.	.	.	.	S	S	N	A	Y	V	V	Q	T	A	L	G	I	M	G	Q	T	Y	Q	P	N	M	F	V	G	T	S	N	L	E	S	A	M	G	K	L	R	S	T	F	G	E	Y	G	L	G	S	A	T	G
Template Known Secondary structure		T	S			B			T	T	T	T	T	T		S												.	.	.	.	T													T	T					T	T	B					T	T														T	T	T	T	T	S
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.					.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		162	.	.																				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.
Query Sequence		V	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	L	S	V	H	N	V	S	T	A	R	D	L	T	K	L	L	I	A	S	K	Q	Y	P	L	I	G	Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.
Template Conservation
Template Sequence		I	D	L	P	D	E	S	T	G	L	V	P	K	E	Y	N	F	A	N	F	I	T	N	A	F	G	Q	F	D	N	Y	T	P	M	Q	L	A	Q	Y	V	A	T	I	A	N	N	G	V	R	L	A	P	H	I	V	E	G	I	Y	D	N	N	D	K	G	G	L	G	E	L	I	Q	A	I	D	T	K	E	I	N
Template Known Secondary structure			S	S	S						B			S	S										T	T	T	S	S	S	B	B														T	T	T						B	S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
																																219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.				.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.							.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.							.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	Y	R	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	C	L	V	M	R	T	V	I	N	N	K	P	V	A	L	.	V	V	M	D	A	F	.	.	.	G	K	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.							.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																	.							.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		K	V	N	I	S	E	S	D	M	A	I	L	H	Q	G	F	Y	Q	V	S	H	G	T	S	P	L	T	T	G	R	A	F	S	D	G	A	T	V	S	I	S	G	K	T	G	T	N	.	.	.	.	T	N	A	V	A	Y	A	P	T	E	N	P	Q	I	A	V	A	V	V	F	P	H	N	T	N	L	T	K	N
Template Known Secondary structure				S	S																				S	T	T				G	G	G	T	T	T		S	S										.	.	.	.								S	T	T	S										T	T				S	S
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.					620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	F	A	D	A	S	R	L	R	T	W	I	E	T	G	K	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	P	A	I	A	R	D	I	I	N	L	Y	N	Q	H	H	P	M
Template Known Secondary structure																		S
Template Predicted Secondary structure
Template SS confidence
		661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions