Job Description P0AFI5 Confidence 96.76% Date Thu Jan 5 11:26:25 GMT 2012 Rank 95 Aligned Residues 136 % Identity 15% Template c2jciA_ PDB info PDB header:drug-binding protein Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: structural insights into the catalytic mechanism and the2 role of streptococcus pneumoniae pbp1b Resolution 2.5 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.													60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.																		.						.																							.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.																		.						.																							.
Query Sequence		S	A	M	I	V	D	L	N	T	N	K	V	I	Y	S	N	H	P	.	.	.	.	.	.	.	.	.	.	.	.	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	.	V	L	D	A	R	.	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P	E	M	K	G	V	Y	S	.	R	V	R
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.																		.						.																							.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																		.						.																							.
Template Conservation
Template Sequence		G	N	V	L	M	D	N	Q	T	G	A	I	L	G	F	V	G	G	R	N	Y	Q	E	N	Q	N	N	H	A	F	D	T	K	R	S	P	A	S	T	T	K	P	L	L	A	Y	G	I	A	I	D	Q	G	L	M	G	S	E	T	I	L	S	N	Y	P	T	N	F	A	N	G	N	P	I	M	Y	A	N	S	K
Template Known Secondary structure								T	T	T		B								S		T	T	T					T	T	T	T			B			G	G	G	G					T							T	T	S			T	T						S			B		T	T	S		B			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		L	N	S	E	I	S	R	K	D	M	L	L	L	A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	.	L	S	V	H	N	V	S	T	A	R	D	L	T	K	L	L	I	A	S
Query Conservation																																																														.
Alig confidence								.	.	.	.																																.	.	.	.																.
Template Conservation								.	.	.	.																																.	.	.	.
Template Sequence		G	T	G	M	M	T	.	.	.	.	L	G	E	A	L	N	Y	S	W	N	I	P	A	Y	W	T	Y	R	M	L	R	E	N	G	V	D	V	K	G	Y	M	.	.	.	.	E	K	M	G	Y	E	I	P	E	Y	G	I	E	S	L	P	M	G	G	G	I	E	V	T	V	A	Q	H	T	N	G	Y	Q	T	L
Template Known Secondary structure				S				.	.	.	.								T		S													T	T								.	.	.	.			T	T				S					T	T	G	G	G	T	T	T			B
Template Predicted Secondary structure								.	.	.	.																																.	.	.	.
Template SS confidence
		503	.	.	.	.	.					.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.					540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions