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Job DescriptionP0AFI5
Confidence99.56%DateThu Jan 5 11:26:25 GMT 2012
Rank50Aligned Residues198
% Identity12%Templatec2jc7A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:beta-lactamase oxa-24; PDBTitle: the crystal structure of the carbapenemase oxa-24 reveals2 new insights into the mechanism of carbapenem-hydrolysis
Resolution2.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50....... ..60.........70......... 80.........90.........100.........110........
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Query Sequence  SAMIVDLNTNKVIYSN. . HPDLVRPIASISKLMTAMVVLD. ARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLL
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Template Sequence  VIIIKEGKNLSTYGNALARANKEYVPASTFKMLNALIGLENHKATTNEIFKWDGKKRTYPMW. . . . . . . EKDMTLGE. . .
Template Known Secondary structure  TTS
GGGGG

B

GGGGTTS

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SS

SSGGG.......SS
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   54.....60.........70.........80.........90.........100.........110..... ....120...
 
   119120.........130.........140.........150.........160....... ..170.........180........ .190
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Query Sequence  LALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL. . . SVHNVSTARDLTKLLIASKQY. . . . . PL
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Template Sequence  . AMALSAVPVYQELARRTGL. . . . . . ELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLPFKLE
Template Known Secondary structure  .T

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TT


TT
TTTSS

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TT
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   124.....130.........140.. .......150.........160.........170.........180.........190......
 
   191........200.........210.........220.........230.........240. ........250........ .260..
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Query Sequence  IGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHC. . . LVMRTVINNKPVALVVM. . . . . DAFG
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Template Sequence  TQEEVKKMLLIKEVNGSK. . . . . . . . . . . . . . . . . . . IYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMS
Template Known Secondary structure  TTTT...................
SSSS
TTS

TT

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   197..200.........210.... .....220.........230.........240.........250.......
 
   263......270.....
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Query Sequence  KYTHFADASRLRT
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Template Sequence  GSIRNEITYKSLE
Template Known Secondary structure  TT
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   258.260.........270
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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