Job Description P0AFI5 Confidence 99.57% Date Thu Jan 5 11:26:25 GMT 2012 Rank 49 Aligned Residues 200 % Identity 16% Template c2iwdA_ PDB info PDB header:antibiotic resistance Chain: A: PDB Molecule:methicillin resistance mecr1 protein; PDBTitle: oxacilloyl-acylated mecr1 extracellular antibiotic-sensor2 domain. Resolution 2.4 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																										.
Query SS confidence															.																										.
Query Sequence		S	A	M	I	V	D	L	N	T	N	K	V	I	.	Y	S	N	H	P	D	L	V	R	P	I	A	S	I	S	K	L	M	T	A	M	V	V	L	D	.	A	R	L	P	L	D	E	K	L	K	V	D	I	S	Q	T	P	E	M	K	G	V	Y	S	R	V	R	L	N	S	E	I	S	R	K	D	M	L	L	L
Query Conservation															.																										.
Alig confidence															.																										.										.	.	.	.	.	.																							.	.	.
Template Conservation																																																			.	.	.	.	.	.																							.	.	.
Template Sequence		S	F	V	L	Y	N	E	R	E	Q	A	Y	S	I	Y	N	E	P	E	S	K	Q	R	Y	S	P	N	T	Y	K	I	Y	L	A	L	M	A	F	D	Q	N	L	L	S	L	N	H	T	E	.	.	.	.	.	.	Q	Q	W	D	K	H	Q	Y	P	F	K	E	W	N	Q	D	Q	N	L	N	S	S	.	.	.
Template Known Secondary structure								T	T	T	T						S						B							T											T	T	S	S	B	T	T	B			.	.	.	.	.	.	B								S	S	G	G	G	S	S		B						.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.																							.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.							.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.
Predicted Secondary structure																																																	.	.																							.	.	.	.	.
Query SS confidence																																																	.	.																							.	.	.	.	.
Query Sequence		A	L	M	S	S	E	N	R	A	A	A	S	L	A	H	H	Y	P	G	G	Y	K	A	F	I	K	A	M	N	A	K	A	K	S	L	G	M	N	N	T	R	F	V	E	P	T	G	.	.	L	S	V	H	N	V	S	T	A	R	D	L	T	K	L	L	I	A	S	K	Q	Y	.	.	.	.	.	P	L	I	G
Query Conservation																																																	.	.																							.	.	.	.	.
Alig confidence		.																		.	.	.	.	.	.																								.	.																							.	.	.	.	.
Template Conservation		.																		.	.	.	.	.	.
Template Sequence		.	M	K	Y	S	V	N	W	Y	Y	E	N	L	N	K	H	L	R	.	.	.	.	.	.	Q	D	E	V	K	S	Y	L	D	L	I	E	Y	G	N	E	E	I	S	G	N	E	N	Y	W	N	E	S	S	L	K	I	S	A	I	E	Q	V	N	L	L	K	N	M	K	Q	H	N	M	H	F	D	N	K	A	I
Template Known Secondary structure		.			T	T												S		.	.	.	.	.	.												T		T	T					S		T	T	T	T	S	S	S	S																	T	T		S	S	S
Template Predicted Secondary structure		.																		.	.	.	.	.	.
Template SS confidence
			436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.							.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.					.	260	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.																		.	.	.	.
Query SS confidence																																																			.	.	.	.																		.	.	.	.
Query Sequence		Q	L	S	T	T	R	E	D	M	A	T	F	S	N	P	T	Y	T	L	P	F	R	N	T	N	H	L	V	Y	R	D	N	W	N	I	Q	L	T	K	T	G	F	T	N	A	A	G	H	C	.	.	.	.	L	V	M	R	T	V	I	N	N	K	P	V	A	L	V	V	M	.	.	.	.	D	A	F	G	K	Y
Query Conservation																																																			.	.	.	.																		.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																		.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	V	E	N	S	M	T	L	K	Q	K	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	Y	V	G	K	T	G	T	G	I	V	N	H	K	E	A	N	G	W	F	V	G	Y	V	E	T	K	D	N	T	Y	Y	F	A	T	H	L	K	G	E	D	N	A	N	G	E
Template Known Secondary structure								T						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T														S	S												S	S		B	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.																				.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	F	A	D	A	S	R	L	R	T	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	Q	Q	I	S	E	R	I	L	K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions