Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFI5
Confidence100.00%DateThu Jan 5 11:26:25 GMT 2012
Rank7Aligned Residues263
% Identity24%Templatec1xp4C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:d-alanyl-d-alanine carboxypeptidase; PDBTitle: crystal structure of a peptidoglycan synthesis regulatory2 factor (pbp3) from streptococcus pneumoniae
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70......... 80.........90.... .....100.........110
Predicted Secondary structure 
















....







..








Query SS confidence 










































. . . .














. .















Query Sequence  EIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD. . . . ARLPLDEKLKVDISQ. . TPEMKGVYSRVRLNSE
Query Conservation   
 
 



 
  

 

   
 
     

 





  


....    

  



   ..      
   
  
  
Alig confidence 










































....














..















Template Conservation   
 
 



 
  

 

  

      


 





 
 

 
  
 
 
   
 

  
            
  
  
Template Sequence  TIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPXEARN
Template Known Secondary structure 

SBSSTTTTS
SS

GGGGTSS
TT


SS
SS



TT
Template Predicted Secondary structure 




































Template SS confidence 















































































   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   111........120.........130.........140.........150.........160........ .170.....
Predicted Secondary structure 

















...............





Query SS confidence 

























































. . . . . . . . . . . . . . .






Query Sequence  ISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLS. . . . . . . . . . . . . . . VHNVSTA
Query Conservation   

 


 
 
  
 



  


 



   

  

  
  


  
 
 

 

 ...............  
 


Alig confidence 

























































...............






Template Conservation   

 


   

 
 



  


 



   

  

  
 


   
 
 

 

               
    


Template Sequence  YTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDXXRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSA
Template Known Secondary structure 

SSTT

S
B


SS


GGGSTT
S
TT

TT



Template Predicted Secondary structure 



































Template SS confidence 















































































   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   176...180....... ..190.........200.........210.........220.. .......230.........240.........250.
Predicted Secondary structure 
.














...












Query SS confidence 











.


































. . .




























Query Sequence  RDLTKLLIASKQ. YPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYR. . . DNWNIQLTKTGFTNAAGHCLVMRTVINNK
Query Conservation   


 
      . 
    
                    
 
 

  ...    
 
 


 
  

   
  
   
 
Alig confidence 











.















......












...




























Template Conservation   


 

   
   
              ......       
  
        
  
 


 
  

  

  
   
 
Template Sequence  YDVAIVARNLIKKYPQVLEITKKPSSTFA. . . . . . GXTITSTNYXLEGXPAYRGGFDGLKTGTTDKAGESFVGTTVEKGX
Template Known Secondary structure 
GGGT
ST......T
S
TTSTTSTT

TT


TTTTT
Template Predicted Secondary structure 




......


























Template SS confidence 















































































   186...190.........200.........210.... .....220.........230.........240.........250.........
 
   252.......260..... ....270.........280.........290.........300.....
Predicted Secondary structure 



....















Query SS confidence 













. . . .







































Query Sequence  PVALVVMDAFGKYT. . . . HFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQ
Query Conservation    
 



      ....
  
   
 
                             
Alig confidence 













....







































Template Conservation    
 



          
  
   
    
       
           
 
  
  
Template Sequence  RVITVVLNADHQDNNPYARFTATSSLXDYISSTFTLRKIVQQGDAYQDSKAPVQDGKE
Template Known Secondary structure 


SS
TT
TT


SSSS
Template Predicted Secondary structure 



















Template SS confidence 

























































   260.........270.........280.........290.........300.........310.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions