Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFI5
Confidence100.00%DateThu Jan 5 11:26:25 GMT 2012
Rank20Aligned Residues212
% Identity20%Templatec1i2sA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:beta-lactamase; PDBTitle: beta-lactamase from bacillus licheniformis bs3
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70......... 80.........90.........100.........110.........
Predicted Secondary structure 











..
















Query SS confidence 





































. .







































Query Sequence  SAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLD. . ARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLL
Query Conservation 



 
  

 

   
 
     

 





  


..    

  



         
   
  
   

 


 
Alig confidence 












.























..





















.
















Template Conservation 

 
 

 

   .  
       

  

      
     
 
                 .         
   
   
Template Sequence  GIFALDTGTNRTV. TYRPDERFAFASTIKALTVGVLLQQKSIEDLNQRITYTRDDLVNYNPI. TEKHVDTGMTLKELADA
Template Known Secondary structure  TTTT.STT


GGGS
TGGGG



GGG

S

TT.GGGSTTT
Template Predicted Secondary structure 




.






















.






Template SS confidence 















































































   45....50....... ..60.........70.........80.........90.........100..... ....110.........120..
 
   120.........130.........140.........150.........160... ......170.........180.........190..
Predicted Secondary structure 












.......












Query SS confidence 











































. . . . . . .




























Query Sequence  ALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVE. . . . . . . PTGLSVHNVSTARDLTKLLIASKQYPLIG
Query Conservation   
  
 



  


 



   

  

  
  


  
 
 
.......
 

   
 


 


 
       
   
Alig confidence 


















.....



















.......




























Template Conservation 

  


 

  
     
.....           
   
                  
  
  
 
 

  
       
Template Sequence  SLRYSDNTAQNLILKQIGG. . . . . PESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALEDKLP
Template Known Secondary structure 

TT
.....TT

S





TTGGG


TT

TT
TSTTS
Template Predicted Secondary structure 





.....































Template SS confidence 















































































   126...130.........140.... .....150.........160.........170.........180.........190.........200
 
   193......200.........210.........220.........230.........240........ .250.........260.....
Predicted Secondary structure 
























.





Query SS confidence 























































.
















Query Sequence  QLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVI. NNKPVALVVMDAFGKYT
Query Conservation   
                    
 
 

      
 
 


 
  

   
  
  . 
   
 



      
Alig confidence 














.....



































.
















Template Conservation            
    .....                  
 
        




       




        
Template Sequence  SEKRELLIDWMKRNT. . . . . TGDALIRAGVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSRDKKD
Template Known Secondary structure  T
S.....S
TTTS
TT
TTT
SSS


SSTT
Template Predicted Secondary structure 


.....































Template SS confidence 









































































   201........210..... ....220.........230.........240.........250.........260.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions