 |
Job Description | P0AFT5 | Confidence | 99.79% | Date | Thu Jan 5 11:27:13 GMT 2012 |
Rank | 110 | Aligned Residues | 117 |
% Identity | 21% | Template | c3lufB_ |
PDB info |
PDB header:signaling protein | Chain: B: PDB Molecule:two-component system response regulator/ggdef |
PDBTitle: structure of probable two-component system response2 regulator/ggdef domain protein
|
Resolution | 1.76 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
. | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . |
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
Query Sequence |   |
K | V | L | I | V | D | D | E | P | L | A | R | E | N | L | R | V | F | L | Q | E | Q | S | D | I | E | I | V | G | E | C | S | N | A | V | E | G | I | G | A | V | H | K | L | R | . |
P | D | V | L | F | L | D | I | Q | M | P | R | I | S | G | L | E | M | V | G | M | L | D | P | E | H | R | . |
. |
. |
P | Y | I | V |
Query Conservation |   |
  |
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   | . |   |
|
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   | . | . | . |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   | . | . |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|
Template Sequence |   |
E | V | L | V | V | D | D | S | R | T | S | R | H | R | T | X | A | Q | L | R | K | Q | L | L | . |
. |
Q | V | H | E | A | S | H | A | R | E | A | L | A | T | L | E | Q | H | P | A | I | R | L | V | L | V | D | Y | Y | X | P | E | I | D | G | I | S | L | V | R | X | L | R | E | R | Y | S | K | Q | Q | L | A | I | I |
Template Known Secondary structure |   |
 |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| . | . |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |  | S |
|
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |
|
| T | T | T | S |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
|
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
  |
  |   |
79 | 80 | . | . | . | |
|
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
Predicted Secondary structure |   |
 |  |  |
|
| . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | L | T | A | F | . |
. |
D | E | Y | A | I | K | A | F | E | E | H | A | F | D | Y | L | L | K | P | I | D | E | A | R | L | E | K | T | L | A | R | L | R | Q | E | R | S | K |
Query Conservation |   |
  |
|
|   |   | . | . |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |
|   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
Template Sequence |   |
G | I | S | V | S | D | K | R | G | L | S | A | R | Y | L | K | Q | G | A | N | D | F | L | N | Q | P | F | E | P | E | E | L | Q | C | R | V | S | H | N | L | E | A | L | E | Q |
Template Known Secondary structure |   |
 |  |  |  |
| S | T | T |
|  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|