Job Description P0AFT5 Confidence 99.91% Date Thu Jan 5 11:27:13 GMT 2012 Rank 30 Aligned Residues 131 % Identity 22% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		K	V	L	I	V	D	D	E	P	L	A	R	E	N	L	R	V	F	L	Q	E	Q	S	D	I	E	I	V	G	E	C	S	N	A	V	E	G	I	G	A	V	H	K	L	R	P	D	V	L	F	L	D	I	Q	M	P	R	I	S	G	L	E	M	V	G	M	L	D	P	E	H	R	.	P	Y	I	V	F	L	T
Query Conservation																																																																										.
Alig confidence																										.	.																																															.
Template Conservation																										.	.
Template Sequence		R	V	L	V	V	D	D	E	E	S	I	T	S	S	L	S	A	I	L	E	E	E	G	Y	.	.	H	P	D	T	A	K	T	L	R	E	A	E	K	K	I	K	E	L	F	F	P	V	I	V	L	D	V	W	X	P	D	G	D	G	V	N	F	I	D	F	I	K	E	N	S	P	D	S	V	V	I	V	I	T
Template Known Secondary structure								S															T	T		.	.						S	S											S			S						S			T	T			T	T	T										T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		A	F	.	.	D	E	Y	A	I	K	A	F	E	E	H	A	F	D	Y	L	L	K	P	I	D	E	A	R	L	E	K	T	L	A	R	L	R	Q	E	R	S	K	Q	D	V	S	L	L	P	E	N	Q	Q	A	L	K
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		G	H	G	S	V	D	T	A	V	K	A	I	K	K	G	A	Y	E	F	L	E	K	P	F	S	V	E	R	F	L	L	T	I	K	H	A	F	E	E	Y	S	K	K	A	P	P	Q	E	E	I	E	F	V	G	E	H
Template Known Secondary structure			S	S												T							S	S																		S															S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions