Job Description P33366 Confidence 3.47% Date Thu Jan 5 11:52:07 GMT 2012 Rank 17 Aligned Residues 178 % Identity 8% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	I	S	Q	Y	G	Y	A	A	L	V	I	G	S	L	A	E	G	E	T	V	T	L	L	G	G	V	A	A	H	Q	G	L	L	K	F	P	L	V	V	L	S	V	A	L	G	G	M	I	G	D	Q	V	L	Y	L	C	G	R	R	F	G	G	K	L	L	R	R	F	S	K	H	Q	D	K	I	E	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A
Template Known Secondary structure		T																											G	G	G	S	S				T	T	T	T																														T	S	S		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	I	Q	R	H	P	Y	L	F	V	I	G	T	R	F	M	Y	G	F	R	V	I	G	P	T	L	I	G	A	S	Q	L	P	P	K	I	F	L	P	L	N	I	L	G	A	F	A	W	A	L	I	F	T	T	I	G	Y	A	G	G	Q	V	I	A	P	W	L	H	N	L	D	Q	H	L	K	H	W	V
Query Conservation
Alig confidence																						.	.																																								.	.	.	.	.	.	.
Template Conservation																						.	.																																								.	.	.	.	.	.	.
Template Sequence		M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	.	.	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	.	.	.	.	.	.	.	E	Q	P	L	G	A	K	G	F	W	L	G
Template Known Secondary structure																						.	.					G	G	G	S	S																												S	S	S	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																						.	.																																								.	.	.	.	.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.								.	.	.	420	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	I	L	V	V	V	L	V	V	G	V	R	W	W	L	K	R	R	G	K	K	K	P	D	H	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q
Template Known Secondary structure													T	G	G	G	S	T	T	T			S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions