 |
Job Description | P15038 | Confidence | 95.44% | Date | Thu Jan 5 11:34:22 GMT 2012 |
Rank | 204 | Aligned Residues | 84 |
% Identity | 12% | Template | c3mwyW_ |
PDB info |
PDB header:hydrolase | Chain: W: PDB Molecule:chromo domain-containing protein 1; |
PDBTitle: crystal structure of the chromodomain-atpase portion of the yeast chd12 chromatin remodeler
|
Resolution | 3.70 Å |
|
 |
  |   |
189 | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | R | Q | V | E | S | S | P | L | N | P | A | Q | A | R | A | V | . |
. |
. |
. |
. |
. |
V | N | G | E | H | S | L | L | V | L | A | G | A | G | S | G | K | T | S | V | L | V | A | R | A | G | W | L | L | A | R | G | E | A | S | P | E | Q | I | L | L | L | A | F | G | R | K | A | A | E | E | M | D | E | R | I | R |
Query Conservation |   |
  |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|
| . | . | . | . | . | . |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |
|   |
|
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|
|   |
|   |   |
|   |   |   |   |   | . |   |   |   |
|   |
|
|
|   |
|   | . |
|
|
|   |
|
|   |   |
|
|   |
Template Sequence |   |
P | P | F | I | K | G | G | E | L | R | D | F | Q | L | T | G | I | N | W | M | A | F | L | W | S | K | G | D | N | G | I | L | A | D | E | M | G | L | G | K | T | V | Q | T | V | A | F | I | S | W | L | I | F | A | R | R | . |
Q | N | G | P | H | I | I | V | V | P | L | . |
S | T | M | P | A | W | L | D | T | F | E |
Template Known Secondary structure |   |
| T | T |
|
| S | S |
|
|
| T |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |
|
|
| T | T | S | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | . |
|
| S |
|  |  |  |  |
|
| T | . | T | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
368 | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | |
. | . | . | . | . | . | 430 | . | . | . | . | |
. | . | . | . | . | 440 | . | . | . | . | . |
  |
  |   |
263 | . | . | . | . | . | . | 270 | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | R | L | H | T | E | D | I | T | A | R | T |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
K | W | A | P | D | L | N | C | I | C | Y | M |
Template Known Secondary structure |   |
 |  | S | T | T |
|
|  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
446 | . | . | . | 450 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|