Job Description P15038 Confidence 97.57% Date Thu Jan 5 11:34:22 GMT 2012 Rank 71 Aligned Residues 151 % Identity 19% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	V	L	R	Q	Q	L	D	L	I	A	T	R	T	G	E	N	K	W	L	T	R	E	Q	T	S	G	V	Q	Q	Q	I	R	Q	A	L	S	A	L	P	L	P	V	N	R	L	E	E	F	D	N	C	R	E	A	W	R	K	C	Q	A	W	L	K	D	I	E	S	A	R	L	Q	H	N	Q	A	Y	T	E
Query Conservation
Alig confidence																																																										.	.
Template Conservation																																																										.	.
Template Sequence		F	Q	Q	L	S	A	R	L	Q	E	A	I	G	R	L	R	G	R	G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	.	.	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y
Template Known Secondary structure																T	T	T	S		S																			T	T	T																.	.					T	T	T	T	T		S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		A	M	L	T	E	Y	A	D	F	F	R	Q	V	E	S	S	P	L	N	P	A	Q	A	R	A	V	V	N	G	E	H	S	L	L	V	L	A	G	A	G	S	G	K	T	S	V	L	V	A	R	A	G	W	L	L	A	R	G	E	A	S	P	E	Q	I	L	L	L	.	.	.	A	F	G	R	K	A	A	E	E
Query Conservation																																																																						.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.						.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.
Template Sequence		E	A	L	K	E	A	.	.	.	.	.	.	.	.	.	.	.	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	.	.	.	.	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	T	T	S	S								S	S									T	T	S	S															T	T		.	.	.	.									S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.
Template SS confidence
		80	.	.	.	.	.												.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	E	R	I	R	E	R	L	H	T	E
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		L	R	L	.	L	G	E	K	V	G	V	P
Template Known Secondary structure					.						T
Template Predicted Secondary structure					.
Template SS confidence
		145	.	.		.	.	150	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions