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Job DescriptionP15038
Confidence100.00%DateThu Jan 5 11:34:22 GMT 2012
Rank1Aligned Residues429
% Identity30%Templatec2is6B_
PDB info PDB header:hydrolase/dnaChain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   196...200.........210.........220.........230.........240.........250.........260........ .270...
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Query Sequence  PLNPAQARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTE. . DITAR
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Template Conservation   
  

  

       

 
 





  
   
  

         


 
 
  
   
  

            
 
Template Sequence  SLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVG
Template Known Secondary structure  T

T

SS


TTSSTS


GGGSSTTTTTT
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   910.........20.........30.........40.........50.........60.........70.........80........
 
   274.....280.........290.........300.........310.........320.........330.........340.........350...
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Query Sequence  TFHALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLA
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Template Sequence  TFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIN. . . . . . . .
Template Known Secondary structure  TT

TT

TT

TTTS
TT

S



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   8990.........100.........110.........120.........130.........140.........150.........160
 
   354.....360.........370.........380.........390.........400.........410.........420..... ...
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Query Sequence  SRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQAIVILEKG. . . . . RFI
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Template Conservation  .................................                                   
           
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYR
Template Known Secondary structure  .................................T
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   165....170.........180.........190.........200.........210.
 
   429430.........440.........450.........460.........470.........480.........490.........500........
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Query Sequence  SPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRI
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Template Sequence  ERFTNILVDEFQDTNNIQYAWIRLLA. . GDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNI
Template Known Secondary structure 

SSGGG

..TTT

GGG


GGGT

TSTT


B

SS
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   212.......220.........230....... ..240.........250.........260.........270.........280.........
 
   509510.........520.........530.........540. ........550.........560.........570.........580..
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Query Sequence  GEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLL. . . . . . DESQLDALLDKLSGYAKPEERILILARYHHMRPASLEKAAT
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Template Conservation                                             
   
  
        




 
           
  
Template Sequence  LSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQ
Template Known Secondary structure  TTSTT





B
SS


S
SSTT

GGGSSGGG
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   290.........300.........310.........320.........330.........340.........350.........360.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                           
              
                       
Template Sequence  ASMPYRIYGGMRFFERQEIKDALSYLRLIVNRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKA
Template Known Secondary structure  TT


SSS
GGGS
TT
TTSS

S

TS
TT
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   370.........380.........390.........400.........410.........420.........430.........440.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                             
                
   
Template Sequence  LAGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSEDLMPLQAF
Template Known Secondary structure  S
TTTS
TSS
TTTS



S
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   450.........460.........470.........480.........490.........500.........510.........520.........
 
   583......590.........600.........610.........620.........630.........640.........
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Query Sequence  . . . . . . . . . . . . . RWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPDAEERRLMYVA
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Template Sequence  LSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQM. . . . . . . . . . . . SLDEGGRLEEERRLAYVG
Template Known Secondary structure  TGGG
S


S


TT




BTBBTTBGG............GGSSTT
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   535....540.........550.........560.........570.........580.... .....590.........600..
 
   650.........660..... ....670.........
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Query Sequence  LTRARHRVWALFNKEN. . . . . . . . . . PSPFVEILKNLDVP
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Template Sequence  VTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVE
Template Known Secondary structure  TTS
TT


B
S
TTT
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   603......610.........620.........630.........640..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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