Job Description P33360 Confidence 100.00% Date Thu Jan 5 11:52:02 GMT 2012 Rank 59 Aligned Residues 220 % Identity 24% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	K	L	F	G	A	Q	K	A	V	N	D	L	N	L	N	F	Q	E	G	S	F	S	V	L	I	G	T	S	G	S	G	K	S	T	T	L	K	.	.	.	.	.	M	I	N	R	L	V	E	H	D	S	G	E	I	R	F	A	G	E	E	I	R	S	L	P	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	L	N	G	V	T	R	N	N	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q	I	T	R	L	V	R	V	D	Q	K	P	I	G	R	T	P	R
Template Known Secondary structure										T	T											S	S							S	T	T	S	S						T	T										S									S	S	G	G	G									S	S		S		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
																																																																					70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	L	R	R	R	M	G	Y	A	I	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S	V	Y	A	P	C	P	V	C	H	G	T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K
Template Known Secondary structure									T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T														T	T	T	S	S	S		B		T	T	G	G	G			S	S	S
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		S	I	G	L	F	P	H	W	S	V	A	Q	N	I	A	T	V	P	Q	L	Q	K	W	S	R	A	R	I	D	D	R	I	D	E	L	M	A	L	L	G	L	E	S	N	L	R	E	R	Y	P	H	Q	L	S	G	G	Q	Q	Q	R	V	G	V	A	R	A	L	A	A	D	P	Q	.	.	.	V	L	L	M	D
Query Conservation																																																																										.	.	.
Alig confidence																			.	.	.	.	.	.																																																		.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		N	I	A	D	V	L	A	L	T	V	D	E	A	H	D	F	F	.	.	.	.	.	.	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q	R	I	K	L	A	T	E	L	R	R	S	G	R	G	G	T	V	Y	V	L	D
Template Known Secondary structure								T		B								T	.	.	.	.	.	.	T	T															T		T	T	S	B	T	T			G	G	G			S															S	S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		685	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.							.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		E	P	F	G	A	L	D	P	V	T	R	G	A	L	Q	Q	E	M	T	R	I	H	R	L	L	G	R	T	I	V	L	V	T	H	D	I	D	E	A	L	R	L	A	E	H	L	V	L	M	.	.	.	.	.	.	D	H	G	E	V	V	Q	Q	G	N	P	L	T	M	L	T	R	P	A	N	D	F	V	R	Q
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																							.																		.										.	.	.	.	.	.
Template Conservation																							.																		.
Template Sequence		E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	.	V	D	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L	V	A	Q	G	T	P	A	E	V	A	Q	A	A	G	S	V	T	A	P	Y
Template Known Secondary structure			S		S	S																	.			T	T														.	T	T		S							S	S	S	G	G	G			S						S						T		S	S		S	S
Template Predicted Secondary structure																							.																		.
Template SS confidence
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.		780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.
		234
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		837

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions