Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP64567
DateThu Jan 5 12:09:30 GMT 2012
Unique Job ID4a120a9d93491475

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2a93B_
Top template information
PDB header:leucine zippers
Chain: B: PDB Molecule:c-myc-max heterodimeric leucine zipper;
PDBTitle: nmr solution structure of the c-myc-max heterodimeric2 leucine zipper, 40 structures
Confidence and coverage
Confidence: 10.6% Coverage: 28%
12 residues ( 28% of your sequence) have been modelled with 10.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40...
Sequence  MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII
Secondary structure 





SS confidence 










































Disorder  ?????































??????
Disorder confidence 










































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2a93 chain B

3D model

Region: 6 - 17
Aligned: 12
Modelled: 12
Confidence: 10.6%
Identity: 50%
PDB header:leucine zippers
Chain: B: PDB Molecule:c-myc-max heterodimeric leucine zipper;
PDBTitle: nmr solution structure of the c-myc-max heterodimeric2 leucine zipper, 40 structures

Phyre2

PDB 1dip chain A

3D model

Region: 6 - 32
Aligned: 27
Modelled: 27
Confidence: 6.4%
Identity: 33%
PDB header:acetylation
Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive
PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures

Phyre2

PDB 1u2u chain A

3D model

Region: 4 - 21
Aligned: 18
Modelled: 18
Confidence: 6.2%
Identity: 50%
PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper

Phyre2

PDB 3he5 chain A

3D model

Region: 6 - 18
Aligned: 13
Modelled: 13
Confidence: 5.8%
Identity: 62%
PDB header:de novo protein
Chain: A: PDB Molecule:synzip1;
PDBTitle: heterospecific coiled-coil pair synzip2:synzip1

Phyre2
1

c2a93B_
2

c1dipA_
3

c1u2uA_
4

c3he5A_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2a93B_



10.6 50 PDB header:leucine zippers
Chain: B: PDB Molecule:c-myc-max heterodimeric leucine zipper;
PDBTitle: nmr solution structure of the c-myc-max heterodimeric2 leucine zipper, 40 structures
2c1dipA_



6.4 33 PDB header:acetylation
Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive
PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures
3c1u2uA_



6.2 50 PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper
4c3he5A_



5.8 62 PDB header:de novo protein
Chain: A: PDB Molecule:synzip1;
PDBTitle: heterospecific coiled-coil pair synzip2:synzip1

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0