Job Description P76010 Confidence 99.90% Date Thu Jan 5 12:17:19 GMT 2012 Rank 3 Aligned Residues 191 % Identity 15% Template c2rdeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vca0042; PDBTitle: crystal structure of vca0042 complexed with c-di-gmp Resolution 1.92 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																			.	.	.	.	.													.									.	.																			.	.	.
Query SS confidence																			.	.	.	.	.													.									.	.																			.	.	.
Query Sequence		D	L	H	K	A	A	I	P	L	R	L	S	W	N	G	G	Q	.	.	.	.	.	L	I	S	K	L	L	A	I	T	P	D	K	.	L	V	L	D	F	G	S	Q	.	.	A	E	D	N	I	A	V	L	K	A	Q	H	I	T	I	T	A	E	.	.	.	T	Q	G	A	K	V	E	F	T	V	E	Q	L	Q
Query Conservation																			.	.	.	.	.													.									.	.																			.	.	.
Alig confidence																			.	.	.	.	.													.									.	.																			.	.	.
Template Conservation
Template Sequence		A	M	V	E	H	S	S	E	L	T	L	S	I	T	T	P	V	G	T	K	F	V	C	R	T	P	F	I	G	T	H	T	D	K	F	L	L	V	E	M	P	K	I	S	A	D	D	L	Q	Y	F	F	Q	E	G	F	W	M	N	I	R	A	I	S	P	R	G	E	G	A	L	I	H	F	R	S	Q	L	M	H
Template Known Secondary structure		T	T	S		T	T										S	S	S														T	T	T																				T	T											S	B	T
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	E	Y	L	Q	L	P	A	F	I	T	V	P	P	P	T	L	W	F	V	Q	R	R	R	Y	F	R	I	S	A	P	L	H	P	P	Y	F	C	Q	T	K	L	A	D	N	S	T	L	R	F	R	L	Y	D	L	S	L	G	G	M	G	A	L	L	E	T	A	K	P	A	E	L	Q	E	G	M	R	F	A
Query Conservation
Alig confidence					.																																				.	.	.	.	.
Template Conservation					.																																				.	.	.	.	.
Template Sequence		I	L	Q	.	E	P	V	P	M	A	F	L	S	I	P	N	T	M	Q	V	S	Q	L	R	K	E	P	R	F	E	L	N	L	A	G	K	V	L	F	.	.	.	.	.	D	E	H	R	G	D	C	E	L	R	D	L	S	R	S	G	C	R	F	I	T	P	P	L	G	K	T	Y	Q	V	G	D	L	V	A	L
Template Known Secondary structure					.	S	S	S									S									S	S		B												.	.	.	.	.	T	T												S	S								T	T	S					T	T
Template Predicted Secondary structure					.																																				.	.	.	.	.
Template SS confidence
		114	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		Q	I	E	V	N	M	G	Q	W	G	V	.	F	H	F	D	A	Q	L	I	S	I	S	E	R	K	V	I	D	G	K	N	E	T	I	T	T	P	R	L	S	F	R	F	L	N	V	S	P	T	V	E	R	Q	L	Q	R	I
Query Conservation													.
Alig confidence													.											.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.
Template Sequence		E	I	F	S	D	L	R	G	T	K	T	F	P	P	L	T	G	K	I	C	N	L	.	.	.	.	.	.	.	.	.	Q	R	S	L	H	H	A	R	Y	G	L	E	F	N	E	E	G	R	N	N	A	K	N	L	L	A	Q
Template Known Secondary structure				B	S	S	T	T				B		S										.	.	.	.	.	.	.	.	.				S	S																					T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.										210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions