Job Description P31126 Confidence 2.50% Date Thu Jan 5 11:47:11 GMT 2012 Rank 22 Aligned Residues 144 % Identity 10% Template c3am6C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:rhodopsin-2; PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga2 acetabularia acetabulum Resolution 3.20 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		I	A	L	T	I	G	V	V	F	S	L	G	F	G	I	L	A	D	K	F	D	K	K	R	Y	M	L	L	A	I	T	A	F	A	S	G	F	I	A	.	.	.	I	T	L	V	N	N	V	T	L	V	V	L	F	F	A	L	I	N	C	A	Y	S	V	F	A	T	V	L	K	A	W	F	A	D	N	L	S	S
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.
Template Conservation
Template Sequence		I	V	F	A	I	M	A	A	A	A	I	A	F	G	V	A	V	H	F	R	P	L	K	S	A	Y	Y	I	N	I	A	I	C	T	I	A	A	T	A	Y	Y	A	M	A	V	N	Y	Q	D	L	T	M	N	G	E	R	Q	V	V	Y	A	R	Y	I	D	W	V	L	T	T	P	L	L	L	L	D	L	I	V	M
Template Known Secondary structure																		G	G	G																											T	T	T	S			B	S	S	S	B	B			T																			T	T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	K	T	K	I	F	S	I	N	Y	T	M	L	N	I	G	W	T	I	G	P	P	L	G	T	L	L	V	M	Q	S	I	N	L	P	F	W	L	A	A	I	C	S	A	F	P	M	L	F	I	Q	I	W	V	K	R	S	E	K	I	I	A	T	E	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	M	G	G	V	M	I	S	W	V	I	G	A	D	I	F	M	I	V	F	G	I	L	G	A	F	E	D	E	H	K	F	K	W	V	Y	F	I	A	G	C	V	M	Q	A	V	L	T	Y	G	M	Y	N	A	T	W	K	D	D	K	S	P	E	Y	H	S
Template Known Secondary structure		S																										T																															S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions