Job Description P0ADV9 Confidence 98.59% Date Wed Jan 25 15:20:29 GMT 2012 Rank 2 Aligned Residues 119 % Identity 17% Template c2r1aD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:protein yhbn; PDBTitle: crystal structure of the periplasmic lipopolysaccharide transport2 protein lpta (yhbn), trigonal form Resolution 3.26 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.												.
Query SS confidence																																																.	.	.												.
Query Sequence		R	L	I	A	Q	H	V	E	Y	Y	S	D	Q	A	V	S	W	F	T	Q	P	V	L	T	T	F	D	K	D	K	I	P	T	W	S	V	K	A	D	K	A	K	L	T	N	D	.	.	.	R	M	L	Y	L	Y	G	H	V	E	V	.	N	A	L	V	P	D	S	Q	L	R	R	I	T	T	D	N	A	Q	I
Query Conservation																																																.	.	.												.
Alig confidence																														.	.	.	.	.														.	.	.												.
Template Conservation																														.	.	.	.	.
Template Sequence		H	I	E	S	D	Q	Q	S	L	D	M	Q	G	N	V	V	T	F	T	G	N	V	I	V	T	Q	G	T	.	.	.	.	.	I	K	I	N	A	D	K	V	V	V	T	R	P	G	G	K	E	V	I	D	G	Y	G	K	P	A	T	F	Y	Q	M	Q	D	N	G	K	P	V	E	G	H	A	S	Q	M	H	Y
Template Known Secondary structure						S						T	T	T														T	T	.	.	.	.	.													T	T									S	S	S								T	T	S								S	B
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		N	L	V	T	Q	D	V	T	S	E	D	L	V	T	L	Y	G	T	T	F	N	S	S	G	L	K	M	R	G	N	L	R	S	K	N	A	E	L	I	.	.	.	.	E	K	V	R	T	S	Y	E	I
Query Conservation																																									.	.	.	.
Alig confidence																																									.	.	.	.
Template Conservation
Template Sequence		E	L	A	K	D	F	V	V	L	T	G	N	A	Y	L	Q	Q	V	D	S	N	I	K	G	D	K	I	T	Y	L	V	K	E	Q	K	M	Q	A	F	S	D	K	G	K	R	V	T	T	V	L	V	P
Template Known Secondary structure		B	T	T	T	T					B	S	S						S	S						S						T	T	T	T	B							T	T					B
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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