Job Description Q46811 Confidence 96.73% Date Wed Jan 25 15:21:12 GMT 2012 Rank 392 Aligned Residues 147 % Identity 11% Template c8ldhA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:m4 apo-lactate dehydrogenase; PDBTitle: refined crystal structure of dogfish m4 apo-lactate2 dehydrogenase Resolution 2.80 Å

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		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.			.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		W	D	E	Y	K	Q	R	W	H	K	P	A	G	S	G	S	R	H	P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	.	.	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	I	I	P	Q	F	R	I	P	A	E	L	I	Q	H	D	I	D	F	V	A
Query Conservation																																											.	.
Alig confidence																																											.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	K	L	I	G	H	L	A	T	S	Q	E	P	R	S	Y	N	K	I	T	V	V	G	V	G	A	V	G	M	A	C	A	I	S	I	L	M	K	D	L	A	D	E	V	A	L	V	D	V	M	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	L	K	G	E	M	M	D	L	Q
Template Known Secondary structure										S								S	S								S												T	T	T			S							S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																		.	.	.	.	60	.	.	.	.	.	.
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	G	V	K	F	E	Y	G	C	S	P	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M
Query Conservation
Alig confidence																							.												.	.	.
Template Conservation																							.												.	.	.
Template Sequence		H	G	S	L	F	L	H	T	A	K	I	V	S	G	K	D	Y	S	V	S	A	.	G	S	K	L	V	V	I	T	A	G	A	.	.	.	R	Q	Q	E	G	E	S	R	L	N	L	V	Q	R	N	V	N	I	F	K	F	I	I	P	N	I	V	K	H	S	P	D	C	I	I	L	V	V	S	N	P	V	D	V
Template Known Secondary structure			T	G	G	G										S	S	G	G	G	G	T	.	T		S									.	.	.				T	T																										T	T							S	S	S
Template Predicted Secondary structure																							.												.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		692	.	.	.	.	.	.	.	700	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	A	R	A	A	L	R	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	Y	V	A	W	K	L	S	G
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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