Job Description Q46811 Confidence 99.97% Date Wed Jan 25 15:21:12 GMT 2012 Rank 29 Aligned Residues 278 % Identity 19% Template c3ic9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h. Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.																												.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	F	R	I	P	A	E	L	I	Q
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	A	I	I	G	T	G	T	A	G	X	G	A	Y	R	A	A	K	K	H	T	D	K	V	V	L	I	E	G	G	A	Y	G	T	T	C	A	R	V	G	C	X	P	S	K	L	L	I	A	A	A	D	A	S	Y	H	A	S	Q	T	D	L	F	G	I	Q	V	D	R	I	S	V	N	G	K	A	V	X	K
Template Known Secondary structure									S												T	T		S							S	S		S	S							S																		T		G	G	G	G	T				S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		605	.	.	.	.	610	.	.													.	.	.	.	.	.	.	620	.	.	.						.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query Sequence		H	D	I	D	F	V	A	A	.	.	.	.	.	.	.	.	.	.	.	.	H	G	V	K	F	E	Y	G	C	S	P	.	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F	L	R
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.																																											.	.
Template Conservation																																																																																.	.
Template Sequence		R	I	Q	T	E	R	D	R	F	V	G	F	V	V	E	S	V	E	S	F	D	E	Q	D	K	I	R	G	F	A	K	F	L	D	E	H	T	L	Q	V	D	D	H	S	Q	V	I	A	K	R	I	V	I	A	T	G	S	R	P	N	Y	P	E	F	L	A	A	A	G	S	R	L	L	T	N	D	N	L	.	.
Template Known Secondary structure																					S		G	G	G				S							T	T					T	T	T																								T	T	G	G	G								.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.					730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	Y	E	E	A	L	H	.	.	.	.	D	G	V	E	F	R	F	L	N	N	P	E	R	F
Query Conservation																																																																.	.	.	.
Alig confidence		.	.	.	.																														.	.																												.	.	.	.
Template Conservation		.	.	.	.																														.	.
Template Sequence		.	.	.	.	F	E	L	N	D	L	P	K	S	V	A	V	F	G	P	G	V	I	G	L	E	L	G	Q	A	L	S	R	L	.	.	G	V	I	V	K	V	F	G	R	S	G	S	V	A	N	L	Q	D	E	E	X	K	R	Y	A	E	K	T	F	N	E	E	F	Y	F	D	A	K	A	R	V	I	S	T	I
Template Known Secondary structure		.	.	.	.	T	T		S	S			S								S													T	.	.	T								S	S	S			T	T			S													T	T	S				T	T
Template Predicted Secondary structure		.	.	.	.																														.	.
Template SS confidence
						165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		744	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.			.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.		.	.	.	.	.	.	.	820
Predicted Secondary structure																																																				.	.																				.
Query SS confidence																																																				.	.																				.
Query Sequence		D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R	P	V	E	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	.	.	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	H	N	.	G	E	T	R	L	T	D	V
Query Conservation																																																				.	.																				.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.																				.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	E	D	A	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	Y	F	D	K	S	G	Q	K	T	T	E	S	F	Q	Y	V	L	A	A	T	G	R	K	A	N	V	D	K	L	G	L	E	N	T	S	I	E	L	D	K	K	N	S	P	L	F	D	E	L	T	L	Q	T	S	V	D	H	I
Template Known Secondary structure				S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S								S						S					T	T	S	S	S		G	G	G	S				B		T	T	S		B		B		T	T	T		B	B	S	S	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.														.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		821	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	I	G	D	V	Q	R	G	P	S	S	I	V	A	A	V	G	T	A	R	R	A	T	D	A	I	L	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	A	G	D	A	N	N	T	L	T	L	L	H	E	A	A	D	D	G	K	V	A	G	T	N	A	G	A	Y
Template Known Secondary structure					G	G	G	G	T	S	S		S																		T
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions