Job Description Q46811 Confidence 99.39% Date Wed Jan 25 15:21:12 GMT 2012 Rank 147 Aligned Residues 295 % Identity 17% Template c2zxiC_ PDB info PDB header:fad-binding protein Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: structure of aquifex aeolicus gida in the form ii crystal Resolution 2.30 Å

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		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	I	I	P	Q	F	R	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	V	V	I	G	G	G	H	A	G	I	E	A	A	L	A	A	A	R	M	G	A	K	T	A	M	F	V	L	N	A	D	T	I	G	Q	M	S	C	N	P	A	I	G	G	I	A	K	G	I	V	V	R	E	I	D	A	L	G	G	E	M	G	K	A	I	D	Q	T	G	I	Q	F	K	M	L	N	T	R
Template Known Secondary structure		S						S	S													T	T								S		G	G	G	T	T				S		S					T	T												T		S																S	T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
																600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.												.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.										.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E	Y	G	C	S	P	.	.	.	.	.	.	.	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	.	.	.	.	.	.	.	.	.	T	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	K	A	V	Q	S	P	R	A	Q	A	D	K	K	R	Y	R	E	Y	M	K	K	V	C	E	N	Q	E	N	L	Y	I	K	Q	E	E	V	V	D	I	I	V	K	N	N	Q	V	V	G	V	R	T	N	L	G	V	E	Y	K	T	K	A	V	V	V	T	T	G	T	F	L	N	G	V	I	Y	I	G	D
Template Known Secondary structure		S		G	G	G																							S	T	T						S								S	S	S	B							T	T	S						S							T	T		B	T						T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.												.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	.	.	.	.	.	.	.	.	.	.	.	A	G	N	T	A	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	I	P	G	G	R	L	G	E	P	R	S	E	G	L	S	D	F	Y	R	R	F	D	F	P	L	I	R	F	K	T	G	T	P	A	R	L	D	K	R	T	I	D	F	S	A	L	E	V	A	P	G	D	D	P	P	P	K	F	S	F	W	T	E	P	V	G	S	Y	W	F	P	K	G	K	E	Q	V	N
Template Known Secondary structure							S	B	T	T	B			B		T								T	T																G	G	G				T	T	S							S	S		B		S		S	S	S	S	S	T	T		S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.					.	.	780	.	.	.	.	.	.	.	.	.	790
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence		Q	E	M	P	A	W	R	E	E	Y	E	E	A	L	H	D	G	V	E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R	P	V	E	T	N	E	T	V	T	L	L	.	.	.	.	V	D	S	L	I	T	A	I	G	E	Q	Q	D
Query Conservation																																																																	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	W	I	T	Y	T	T	P	K	T	H	E	I	I	R	K	N	L	H	R	T	A	R	Y	C	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	D	K	I	V	K	F	P	D	K	E	R	H	Q	I	F	L	E	P	E	G	L	D	T	I	E	I	Y	P	N	G	L	S	T	S
Template Known Secondary structure																		T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	T	S		T	T		S									S		S	S								T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.																		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		791	.	.	.	.	.	.																		.			.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.		.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.																		.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.																		.
Query Sequence		T	E	A	L	N	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	.	.	V	P	L	D	K	N	G	W	P	D	V	D	H	N	G	E	T	.	R	L	T	D	V	F	M	I	G	D	V	Q	R	G	P	S	S	I	V	A	A	V	G	T	A	R	R	A	T	D	A	I	L	S	R
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.																		.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.																		.												.
Template Conservation																																																										.
Template Sequence		L	P	E	E	V	Q	W	E	M	Y	R	S	I	P	G	L	E	N	V	V	L	I	R	P	A	Y	A	I	E	Y	D	V	V	P	P	T	E	L	Y	P	T	L	E	T	K	K	I	R	G	L	F	H	A	G	N	F	.	N	G	T	T	G	Y	E	E	A	A	G	Q	G	I	V	A	G	I	N	A	A	L	R
Template Known Secondary structure		S										T	T	S	T	T		T	T																	G	G	G	B		T	T	S	B	B	S	S	S	B	T					G	G	G	.	G	T	B		S
Template Predicted Secondary structure																																																										.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		851	.	.	.	.	.	.	.	.	860	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	I	R	S	H	Q	N	D	K	Y	W	N	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	G	K	E	P	I	Y	L	R	R	D	E	S
Template Known Secondary structure			T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions