Phyre 2 alignment of Q46811 with c2zbwA

Job Description Q46811
Confidence 99.96% Date Wed Jan 25 15:21:12 GMT 2012

Rank 56 Aligned Residues 300

% Identity 22% Template c2zbwA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.											.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.
Query Sequence	P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	I	I	P	Q	F	R	I	.	.	.	.	.	.	.	.	.	.	P	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E	Y	G	C
Query Conservation																																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	V	L	I	V	G	A	G	P	T	G	L	F	A	G	F	Y	V	G	X	R	G	L	S	F	R	F	V	D	P	L	P	E	P	G	G	Q	L	T	A	L	Y	P	E	K	Y	I	Y	D	V	A	G	F	P	K	V	Y	A	K	D	L	V	K	G	L	V	E	Q	V	A	P	F	N	P	V	Y	S	L	G	E
Template Known Secondary structure								S													T	T								S	S	S	S	S							T		T	T	S					S	T	T		S	S															G	G	G							S
Template Predicted Secondary structure
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.

	622	.											.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.
Query Sequence	S	P	.	.	.	.	.	.	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M
Query Conservation			.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation																																																							.
Template Sequence	R	A	E	T	L	E	R	E	G	D	L	F	K	V	T	T	S	Q	G	N	A	Y	T	A	K	A	V	I	I	A	A	G	V	G	A	F	E	P	R	R	I	G	A	P	G	E	R	E	F	E	G	R	G	V	.	Y	Y	A	V	K	S	K	A	E	F	Q	G	K	R	V	L	I	V	G	G	G	D	S	A	V
Template Known Secondary structure									T	T							T	T	S													T	T	S										T	T	T	T	T	T	B	T	T	T		.		S	S		S		G	G	G	G	T	T								S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

	692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.			.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	Y	.	.	E	E	A	L	H	D	G	V	E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R	P	V	E
Query Conservation																																		.	.
Alig confidence										.	.																							.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.																																																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	W	A	L	N	L	L	D	T	.	.	A	R	R	I	T	L	I	H	R	R	P	Q	F	R	A	H	E	A	S	V	K	E	L	X	K	A	H	E	E	G	R	L	E	V	L	T	P	Y	E	L	R	R	V	E	G	D	E	R	V	R	W	A	V	V	F	H	.	.	.	.	.	.	.	.	.	.	.	N	Q
Template Known Secondary structure						T	T	T	T	.	.	S	S							S	S	S	S			S														T	T	S	S				T	T									S	S	S									.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure										.	.																																																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	166	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230												.	.

	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830				.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	H	N	G	E	T	R	L	T	D	V	F	M	I	G	D	V	Q	R	G	P	.	.	.	S	S	I	V	A	A	V	G	T	A	R	R	A	T	D	A
Query Conservation																																																														.	.	.
Alig confidence																																.																														.	.	.
Template Conservation																																.
Template Sequence	T	Q	E	E	L	A	L	E	V	D	A	V	L	I	L	A	G	Y	I	T	K	L	G	P	L	A	N	W	G	L	A	.	L	E	K	N	K	I	K	V	D	T	T	X	A	T	S	I	P	G	V	Y	A	C	G	D	I	V	T	Y	P	G	K	L	P	L	I	V	L	G	F	G	E	A	A	I	A	A	N	H
Template Known Secondary structure	T									S													G	G	G	G	G	S				.			T	T						T	T		B		S	S	T	T					S	T	T				T	T
Template Predicted Secondary structure																																.
Template SS confidence
	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

	847	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	L	S	R	E	N	I	R	S	H	Q	N	D	K	Y	W	N	N	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	A	A	Y	A	N	P	A	L	K	V	N	P	G	H	S	S	E	K	A
Template Known Secondary structure							T	T	S		S	S				G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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