Job Description Q46811 Confidence 100.00% Date Wed Jan 25 15:21:12 GMT 2012 Rank 2 Aligned Residues 426 % Identity 30% Template c2vdcI_ PDB info PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

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		432	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.			.	.
Predicted Secondary structure															.																																																															.	.
Query SS confidence															.																																																															.	.
Query Sequence		E	Y	T	Q	K	H	W	K	P	E	E	R	I	.	E	V	A	E	D	L	P	L	T	D	C	Y	V	A	P	C	V	T	A	C	A	I	K	Q	D	I	P	E	Y	I	R	L	L	G	E	H	R	Y	A	D	A	L	E	L	I	Y	Q	R	N	A	L	P	A	I	T	G	H	I	C	D	H	Q	.	.	C	Q
Query Conservation															.																																																															.	.
Alig confidence															.																																																															.	.
Template Conservation
Template Sequence		Q	D	F	A	E	I	Y	A	R	F	S	D	E	R	A	N	E	Q	A	N	R	C	S	Q	C	G	V	P	F	C	Q	V	H	C	P	V	S	N	N	I	P	D	W	L	K	L	T	S	E	G	R	L	E	E	A	Y	E	V	S	Q	A	T	N	N	F	P	E	I	C	G	R	I	C	P	Q	D	R	L	C	E
Template Known Secondary structure									S	S				T	T								S				S	S						T	S	T	T														T														S											G	G	G	S	G	G
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		509	510	.	.		.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Y	N	C	T	.	R	L	D	Y	D	S	A	L	N	I	R	E	L	K	K	V	A	L	E	K	G	W	D	E	Y	K	Q	R	W	H	K	P	A	G	S	G	S	R	H	P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G
Query Conservation						.
Alig confidence						.																																				.
Template Conservation																																										.
Template Sequence		G	N	C	V	I	E	Q	S	T	H	G	A	V	T	I	G	S	V	E	K	Y	I	N	D	T	A	W	D	Q	G	W	V	K	P	R	T	P	S	R	E	.	L	G	L	S	V	G	V	I	G	A	G	P	A	G	L	A	A	A	E	E	L	R	A	K	G	Y	E	V	H	V	Y	D	R	Y	D	R	M	G	G
Template Known Secondary structure		G	G		G	G	G	G	S	S	S		S																		T							S		S	S	.											S														T								S	S	S	S		S	T
Template Predicted Secondary structure																																										.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.			.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.		.	.	.	660	.	.	.	.
Predicted Secondary structure																																						.	.																																		.
Query SS confidence																																						.	.																																		.
Query Sequence		V	V	K	N	I	I	P	Q	F	R	I	P	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E	Y	G	C	S	P	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	.	Q	N	V	W	K	S	L	P
Query Conservation																																						.	.																																		.
Alig confidence																																						.	.											.																							.
Template Conservation																																																		.
Template Sequence		L	L	V	Y	G	I	P	G	F	K	L	E	K	S	V	V	E	R	R	V	K	L	L	A	D	A	G	V	I	Y	H	P	N	F	E	V	G	R	D	A	S	L	P	E	L	R	R	K	.	H	V	A	V	L	V	A	T	G	V	Y	K	A	R	D	I	K	A	P	G	S	G	L	G	N	I	V	A	A	L	D
Template Known Secondary structure						T	S		T	T	T	S															T	T					T	T			B	T	T	T	B							S	S	.		S														T	T		S			T	T	T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		665	.	.	.	.	670													.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	R	E	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	Y	E	E	A	L	H	D	G	V
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																																																		.
Template Sequence		Y	L	T	T	S	N	K	V	S	L	G	D	T	V	E	A	Y	E	N	G	S	L	N	A	A	G	K	H	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	A	I	R	Q	.	G	A	T	S	V	K	C	L	Y	R	R	D	R	K	N	M	P	G	S	Q	R	E	V	A	H	A	E	E	E	G	V
Template Known Secondary structure												T	T	T		S	S			T	T		S					S							S	S													T	.	T		S							S	S		S	T	T		S	S											T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750				.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770		.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.			.	.	.	.	.	.	.	800	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																					.																							.	.
Query SS confidence																				.	.	.																					.																							.	.
Query Sequence		E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	.	.	.	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R	P	V	E	T	.	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	.	.	A	L	N	A	M	G	V	P	L	D	K	N	G	W
Query Conservation																				.	.	.																					.																							.	.
Alig confidence																				.	.	.																					.																							.	.
Template Conservation
Template Sequence		E	F	I	W	Q	A	A	P	E	G	F	T	G	D	T	V	V	T	G	V	R	A	V	R	I	H	L	G	V	A	D	A	T	G	R	Q	T	P	Q	V	I	E	G	S	E	F	T	V	Q	A	D	L	V	I	K	A	L	G	F	E	P	E	D	L	P	N	A	F	D	E	P	E	L	K	V	T	R	W	G	T
Template Known Secondary structure							S	S	S											T	T														T	T																S						S													S	T	T	S		B		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		807	.	.	810		.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		P	D	V	D	.	H	N	G	E	T	R	L	T	D	V	F	M	I	G	D	V	Q	R	G	P	S	S	I	V	A	A	V	G	T	A	R	R	A	T	D	A	I	L	S	R	E	N	I	R	S	H	Q	N	D	K
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		L	L	V	D	H	R	T	K	M	T	N	M	D	G	V	F	A	A	G	D	I	V	R	G	A	S	L	V	V	W	A	I	R	D	G	R	D	A	A	E	G	I	H	A	Y	A	K	A	K	A	E	A	P	V	A
Template Known Secondary structure		B				T	T	T		B		S	S	T	T					G	G	G	G	S	S			S																								T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.