Job Description Q46811 Confidence 99.97% Date Wed Jan 25 15:21:12 GMT 2012 Rank 38 Aligned Residues 286 % Identity 21% Template c2qaeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase Resolution 1.90 Å

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		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	.	.	I	I	P	Q	F	R	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	V	V	I	G	G	G	P	G	G	Y	V	A	S	I	K	A	A	Q	L	G	M	K	T	A	C	V	E	K	R	G	A	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	H	A	T	H	L	Y	H	D	A	H	A	N	F	A	R	Y	G	L	M	G	G	E	G	V	T	M	D	S	A	K
Template Known Secondary structure									S													T	T								S	S	S	S	S	S							S																				T					T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
											600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.										.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E	Y	G	C	S	P	D	L	T	I	E	.	.	.	.	.	.	.	.	.	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K
Query Conservation		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	Q	Q	Q	K	E	R	A	V	K	G	L	T	G	G	V	E	Y	L	F	K	K	N	K	V	T	Y	Y	K	G	E	G	S	F	E	T	A	H	S	I	R	V	N	G	L	D	G	K	Q	E	M	L	E	T	K	K	T	I	I	A	T	G	S	E	P	T	E	L	P	F	L	P	F	D	E	K	V	V	L	S
Template Known Secondary structure																									T													T	T							T	T	S																					B	T	T	B				S	S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.						.	.	730	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.
Query Sequence		S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	Y	E	E	A	.	.	.	.	.	L	H	D	G	V	E	F	R	F
Query Conservation																																																																				.	.	.	.	.
Alig confidence						.	.	.	.	.	.																														.	.																										.	.	.	.	.
Template Conservation						.	.	.	.	.	.																														.	.
Template Sequence		S	T	G	A	.	.	.	.	.	.	L	A	L	P	R	V	P	K	T	M	V	V	I	G	G	G	V	I	G	L	E	L	G	S	V	W	A	R	L	.	.	G	A	E	V	T	V	V	E	F	A	P	R	C	A	P	T	L	D	E	D	V	T	N	A	L	V	G	A	L	A	K	N	E	K	M	K	F	M	T
Template Known Secondary structure						.	.	.	.	.	.		T		S	S			S								S													T	.	.	T								S	S	S	S	S	S	T	T	S																T
Template Predicted Secondary structure						.	.	.	.	.	.																														.	.
Template SS confidence
		164	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		737	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.			.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R	P	V	E	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	.	.	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	H	N	G	E
Query Conservation																																																											.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	K	V	V	G	G	T	N	N	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	S	L	E	V	E	G	K	R	E	T	V	T	C	E	A	L	L	V	S	V	G	R	R	P	F	T	G	G	L	G	L	D	K	I	N	V	A	K	N	E	R	G	F	V	K	I	G	D	H	F	E
Template Known Secondary structure		S										S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S															S						S							T	T	S						T			B		T	T	S		B				T	T	S	B
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.																.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		815	.	.	.	.	820	.	.	.	.	.	.	.	.		.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		T	R	L	T	D	V	F	M	I	G	D	V	Q	R	.	G	P	S	S	I	V	A	A	V	G	T	A	R	R	A	T	D	A	I	L	S	R	E	N	I	R	S	H	Q	N	D	K
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		T	S	I	P	D	V	Y	A	I	G	D	V	V	D	K	G	P	M	L	A	H	K	A	E	D	E	G	V	A	C	A	E	I	L	A	G	K	P	G	H	V	N	Y	G	V	I	P
Template Known Secondary structure			S	S	T	T					G	G	G	B	S	S	S		S																	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions