Job Description Q46811 Confidence 99.95% Date Wed Jan 25 15:21:12 GMT 2012 Rank 75 Aligned Residues 285 % Identity 24% Template c2q0lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+ Resolution 1.45 Å

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		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.									.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence		P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	I	.	.	.	.	.	.	.	.	I	P	Q	F	R	I	P	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E	Y	G	C	S	P
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	C	A	I	I	G	G	G	P	A	G	L	S	A	G	L	Y	A	T	R	G	G	V	K	N	A	V	L	F	E	K	G	M	P	G	G	Q	I	T	G	S	S	E	I	E	N	Y	P	G	V	K	E	V	V	S	G	L	D	F	M	Q	P	W	Q	E	Q	C	F	R	F	G	L	K	H	E	M	T	A	V	Q
Template Known Secondary structure									S													T	T		S	S						S	S	S	T	T		G	G	G	G		S		B			S	T	T			S		B															T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
											624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M	D	C	A
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																						.																									.	.
Template Conservation																																.																									.	.
Template Sequence		R	V	S	K	K	D	S	H	F	V	I	L	A	E	D	G	K	T	F	E	A	K	S	V	I	I	A	T	G	G	.	S	P	K	R	T	G	I	K	G	E	S	E	Y	W	G	K	G	V	S	T	C	A	T	C	.	.	D	G	F	F	Y	K	N	K	E	V	A	V	L	G	G	G	D	T	A	V	E	E	A
Template Known Secondary structure							T	T							T	T	S															.								B	T					B	T	T	T			S					.	.		G	G	G	G	T	T	S								S
Template Predicted Secondary structure																																.																									.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	Y	E	E	A	L	H	D	G	V	E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R	P	V	E	T	N	E	T	V
Query Conservation
Alig confidence								.	.															.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.															.																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	L	A	N	I	.	.	C	K	K	V	Y	L	I	H	R	R	D	G	F	R	.	C	A	P	I	T	L	E	H	A	K	N	N	D	K	I	E	F	L	T	P	Y	V	V	E	E	I	K	G	D	A	S	G	V	S	S	L	.	.	.	.	.	.	.	.	.	.	S	I	K	N	T	A	T	N	E	K	R
Template Known Secondary structure						T	T	.	.	S	S							S	S	S	S			.	S										T		T	T					T	T										T	T						.	.	.	.	.	.	.	.	.	.					T	T	T
Template Predicted Secondary structure								.	.															.																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.											.	.	.	.	220	.	.	.	.	.	.
		775	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.					.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.		.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																																				.
Query SS confidence																				.	.	.	.																																				.
Query Sequence		T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	.	.	.	.	A	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	H	N	G	E	T	R	L	T	D	V	F	M	I	G	D	V	Q	.	R	G	P	S	S	I	V	A	A	V	G	T	A	R	R	A	T	D	A	I	L	S
Query Conservation																				.	.	.	.																																				.
Alig confidence																				.	.	.	.																																				.
Template Conservation
Template Sequence		E	L	V	V	P	G	F	F	I	F	V	G	Y	D	V	N	N	A	V	L	K	Q	E	D	N	S	M	L	C	K	C	D	E	Y	G	S	I	V	V	D	F	S	M	K	T	N	V	Q	G	L	F	A	A	G	D	I	R	I	F	A	P	K	Q	V	V	C	A	A	S	D	G	A	T	A	A	L	S	V	I	S
Template Known Secondary structure						S						S							G	G	G	B		T	T	S		B	S	S		B		T	T	S		B				T	T		B		S	S	T	T					S	T	T	B	T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		850	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		307	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions