Phyre 2 alignment of Q46811 with c2cduB

Job Description Q46811
Confidence 99.97% Date Wed Jan 25 15:21:12 GMT 2012

Rank 27 Aligned Residues 280

% Identity 18% Template c2cduB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nadph oxidase; PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis

Resolution 1.8 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.			.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590						.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure																						.	.																			.	.	.	.	.																																		.
Query SS confidence																						.	.																			.	.	.	.	.																																		.
Query Sequence	P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	.	.	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	.	.	.	.	.	N	I	I	P	Q	F	R	I	P	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G	V	K	F	E	Y	G	C	S	P	.
Query Conservation																						.	.																			.	.	.	.	.																																		.
Alig confidence																						.	.																			.	.	.	.	.																																		.
Template Conservation
Template Sequence	K	V	I	V	V	G	C	T	H	A	G	T	F	A	V	K	Q	T	I	A	D	H	P	D	A	D	V	T	A	Y	E	M	N	D	N	I	S	F	L	S	G	I	A	L	Y	L	G	K	E	I	K	N	N	D	P	R	G	L	F	Y	S	S	P	E	E	L	S	N	L	G	A	N	V	Q	M	R	H	Q	V	T
Template Known Secondary structure								S															T	T								S	S	S			S	B									T	T		S	G	G	G		G	G	G	G	B	S									T	T						S
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

													624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V	V	V	G	A	G	N	T	A	M
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	V	D	P	E	T	K	T	I	K	V	K	D	L	I	T	N	E	E	K	T	E	A	Y	D	K	L	I	M	T	T	G	S	K	P	T	V	P	P	I	P	G	I	D	S	S	R	V	Y	L	C	K	N	Y	N	D	A	K	K	L	F	E	E	A	P	K	A	K	T	I	T	I	I	G	S	G	Y	I	G	A
Template Known Secondary structure				G	G	G	T							T	T	T									S														S		T	T	T	T	S	T	T					S	S											G	G	G		S								S
Template Predicted Secondary structure
Template SS confidence
	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

	692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.						.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	.	.	.	.	.	Y	E	E	A	L	H	D	G	V	E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K	G	R	R	R
Query Conservation																																	.	.	.	.	.
Alig confidence										.	.																						.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	L	A	E	A	Y	S	N	Q	.	.	N	Y	N	V	N	L	I	D	G	H	E	R	V	L	Y	K	Y	F	D	K	E	F	T	D	I	L	A	K	D	Y	E	A	H	G	V	N	L	V	L	G	S	K	V	A	A	F	E	E	V	D	D	E	I	I	T	K	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	.	.	T								S	S	S	S	T	T	T	T	T	S															T	T						S	S									T	T							.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	163	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

	767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830											.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	V	E	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	H	N	G	E	T	R	L	T	D	V	F	M	I	G	D	V	Q	R	G	P	.	.	.	.	.	.	.	.	.	.	S	S	I	V	A	A
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.																														.																															.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.																														.
Template Sequence	.	.	.	.	L	D	G	K	E	I	K	S	D	I	A	I	L	C	I	G	F	R	P	N	T	E	L	L	K	G	K	V	A	.	M	L	D	N	G	A	I	I	T	D	E	Y	M	H	S	S	N	R	D	I	F	A	A	G	D	S	A	A	V	H	Y	N	P	T	N	S	N	A	Y	I	P	L	A	T	N	A
Template Known Secondary structure	.	.	.	.	T	T	S						S						S							G	G	G	T	T	T	S		.	B		T	T			B				T	T	S	B		S	S	T	T					G	G	G	B					G	G	G	T
Template Predicted Secondary structure	.	.	.	.																														.
Template SS confidence
					229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

	837	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure
Query SS confidence
Query Sequence	V	G	T	A	R	R	A	T	D	A	I	L	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	R	Q	G	R	L	V	G	L	N	L	T	E	D
Template Known Secondary structure										T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	304	.	.	.	.	.	310	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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