Phyre 2 alignment of Q46811 with c1vdcA

Job Description Q46811
Confidence 99.96% Date Wed Jan 25 15:21:12 GMT 2012

Rank 63 Aligned Residues 293

% Identity 21% Template c1vdcA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dependent thioredoxin reductase; PDBTitle: structure of nadph dependent thioredoxin reductase

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.													.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	S	G	S	R	H	P	V	A	V	I	G	A	G	P	A	G	L	A	A	G	Y	F	L	A	R	A	G	H	P	V	T	L	F	E	R	E	A	N	A	G	G	V	V	K	N	.	.	.	.	.	.	.	.	.	.	.	.	I	I	P	Q	F	R	I	P	A	E	L	I	Q	H	D	I	D	F	V	A	A	H	G
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	T	H	N	T	R	L	C	I	V	G	S	G	P	A	A	H	T	A	A	I	Y	A	A	R	A	E	L	K	P	L	L	F	E	G	W	M	A	N	D	I	A	P	G	G	Q	L	T	T	T	T	D	V	E	N	F	P	G	F	P	E	G	I	L	G	V	E	L	T	D	K	F	R	K	Q	S	E	R	F	G
Template Known Secondary structure													S													T	T									S	S	B	T	T	B		T	T		G	G	G	G		S					S	T	T		T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	615	.	.	.	.	620	.	.	.									.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.					.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.																																		.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.																																		.	.	.	.
Query Sequence	V	K	F	E	Y	G	C	S	P	.	.	.	.	.	.	.	.	D	L	T	I	E	Q	L	K	N	Q	G	F	H	Y	V	L	I	A	T	G	T	D	K	N	S	G	V	K	L	A	G	D	N	.	.	.	.	Q	N	V	W	K	S	L	P	F	L	R	E	Y	N	K	G	T	A	L	K	L	G	K	H	V	V
Query Conservation										.	.	.	.	.	.	.	.																																		.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																						.												.	.	.	.
Template Conservation																																							.
Template Sequence	T	T	I	F	T	E	T	V	T	K	V	D	F	S	S	K	P	F	K	L	F	T	D	S	K	A	I	L	A	D	A	V	I	L	A	I	G	A	.	V	A	K	R	L	S	F	V	G	S	G	E	V	L	G	G	F	W	N	R	G	I	S	A	C	A	V	C	D	G	A	A	P	I	F	R	N	K	P	L	A
Template Known Secondary structure														S	S	S	S						S	S															.								B	T		S	S	S	S	S			B	T	T	T			S						T	T	S	G	G	G	T	T	S
Template Predicted Secondary structure																																							.
Template SS confidence
	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

	683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	V	G	A	G	N	T	A	M	D	C	A	R	A	A	L	R	V	P	G	V	E	K	A	T	I	V	Y	R	R	S	L	Q	E	M	P	A	W	R	E	E	Y	E	E	A	L	H	D	G	V	E	F	R	F	L	N	N	P	E	R	F	D	A	D	G	T	L	T	L	R	V	M	S	L	G	E	P	D	E	K
Query Conservation
Alig confidence																			.	.															.																																							.	.	.	.	.	.	.
Template Conservation																			.	.															.																																							.	.	.	.	.	.	.
Template Sequence	V	I	G	G	G	D	S	A	M	E	E	A	N	F	L	T	K	Y	.	.	G	S	K	V	Y	I	I	H	R	R	D	A	F	R	.	A	S	K	I	M	Q	Q	R	A	L	S	N	P	K	I	D	V	I	W	N	S	S	V	V	E	A	Y	G	D	G	E	R	D	V	L	G	G	L	.	.	.	.	.	.	.
Template Known Secondary structure					S											T	T	T	.	.	S	S							S	S	S	S			.	S										T		T	T						S									S	S	S	S	S	S					.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.															.																																							.	.	.	.	.	.	.
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

	763	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810		.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.		830	.	.	.	.	.	.	.	.	.	840
Predicted Secondary structure																																																	.																				.
Query SS confidence																																																	.																				.
Query Sequence	G	R	R	R	P	V	E	T	N	E	T	V	T	L	L	V	D	S	L	I	T	A	I	G	E	Q	Q	D	T	E	A	L	N	A	M	G	V	P	L	D	K	N	G	W	P	D	V	D	.	H	N	G	E	T	R	L	T	D	V	F	M	I	G	D	V	Q	R	G	.	P	S	S	I	V	A	A	V	G	T	A
Query Conservation																																																	.																				.
Alig confidence	.																																	.															.																				.
Template Conservation	.																																	.
Template Sequence	.	K	V	K	N	V	V	T	G	D	V	S	D	L	K	V	S	G	L	F	F	A	I	G	H	E	P	A	T	K	F	L	D	.	G	G	V	E	L	D	S	D	G	Y	V	V	T	K	P	G	T	T	Q	T	S	V	P	G	V	F	A	A	G	D	V	Q	D	K	K	Y	R	Q	A	I	T	A	A	G	T	G
Template Known Secondary structure	.					T	T	T									S						S					S		G	G	G	T	.	T	S	S		B		T	T	S		B				T	T	S		B		S	S	T	T					G	G	G	G		S	S
Template Predicted Secondary structure	.																																	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

	841	.	.	.	.	.	.	.	.	850	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	R	A	T	D	A	I	L	S	R	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	C	M	A	A	L	D	A	E	H	Y	L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	303	.	.	.	.	.	.	310	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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